Gene annotation
Transcriptome id Sobic.001G381200.1
Synonym 1, GFS1, VSR1, Sb01g036170, BP80B, ATVSR1, BP-80, ATELP1, ATELP, BP80-1, BP80
Functional annotation vacuolar-sorting receptor precursor, putative, expressed
UniProt C5X0T6
Pfam PF02225
Panther DB PTHR22765 PTHR22765:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52850 : vacuolar sorting receptor homolog 1
RAP-DB (Rice) LOC_Os03g21720.1 : vacuolar-sorting receptor precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052424 , Zm00025a033308 , Zm00025a013184 , Zm00025a002348
Brachypodium KQK21802 , KQK14626
Barley HORVU2Hr1G017770.3 , HORVU2Hr1G017770.1 , HORVU2Hr1G017770.8 , HORVU2Hr1G017770.9 , HORVU4Hr1G050280.1 , HORVU4Hr1G050280.3 , HORVU4Hr1G050280.2 , HORVU4Hr1G050280.5 , HORVU4Hr1G050280.4 , HORVU4Hr1G050280.7 , HORVU4Hr1G050280.6 , HORVU4Hr1G050280.9 , HORVU4Hr1G050280.8 , HORVU4Hr1G050280.10 , HORVU2Hr1G017770.15 , HORVU2Hr1G017770.16 , HORVU2Hr1G017770.17 , HORVU2Hr1G017770.19
Wheat TraesCS2D02G105100 , TraesCS5A02G050400 , TraesCS4B02G170000 , TraesCS4B02G170000 , TraesCS4B02G170000 , TraesCS2A02G105500 , TraesCS5A02G050400 , TraesCS4A02G135100 , TraesCS4A02G135100 , TraesCS4A02G135100 , TraesCS2B02G122400 , TraesCS4D02G172100 , TraesCS4D02G172100
Populus -


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cDNA sequences
Sobic.001G381200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
2 Sobic.010G196500 zinc-binding protein, putative, expressed -
3 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
4 Sobic.002G193100 expressed protein -
5 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
6 Sobic.003G086900 C2 domain containing protein, putative, expressed -
7 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
8 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
10 Sobic.002G187700 expressed protein -
11 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
12 Sobic.002G386100 expressed protein -
13 Sobic.003G247500 expressed protein -
14 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
15 Sobic.006G213500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
16 Sobic.003G355900 prenylated rab acceptor, putative, expressed -
17 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
18 Sobic.003G422500 expressed protein -
19 Sobic.006G087700 T-complex protein 11, putative, expressed -
20 Sobic.003G198800 myosin, putative, expressed K10357: myosin V


Gene co-expression network
sample Sobic001G381200 Sobic001G381200 Sobic003G229300 Sobic003G229300 Sobic001G381200--Sobic003G229300 Sobic010G196500 Sobic010G196500 Sobic001G381200--Sobic010G196500 Sobic003G343500 Sobic003G343500 Sobic001G381200--Sobic003G343500 Sobic002G193100 Sobic002G193100 Sobic001G381200--Sobic002G193100 Sobic001G500800 Sobic001G500800 Sobic001G381200--Sobic001G500800 Sobic003G086900 Sobic003G086900 Sobic001G381200--Sobic003G086900 Sobic004G169000 Sobic004G169000 Sobic001G381200--Sobic004G169000 Sobic001G476700 Sobic001G476700 Sobic001G381200--Sobic001G476700 Sobic004G118200 Sobic004G118200 Sobic001G381200--Sobic004G118200 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic006G133900 Sobic006G133900 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic001G488700 Sobic001G488700 Sobic010G196500--Sobic001G488700 Sobic010G196500--Sobic001G500800 Sobic010G196500--Sobic003G086900 Sobic010G196500--Sobic002G193100 Sobic007G084300 Sobic007G084300 Sobic010G196500--Sobic007G084300 Sobic002G386100 Sobic002G386100 Sobic010G196500--Sobic002G386100 Sobic008G146900 Sobic008G146900 Sobic010G196500--Sobic008G146900 Sobic010G196500--Sobic001G381200 Sobic002G187700 Sobic002G187700 Sobic010G196500--Sobic002G187700 Sobic001G512500 Sobic001G512500 Sobic003G343500--Sobic001G512500 Sobic003G343500--Sobic006G133900 Sobic001G065600 Sobic001G065600 Sobic003G343500--Sobic001G065600 Sobic006G065600 Sobic006G065600 Sobic003G343500--Sobic006G065600 Sobic007G167100 Sobic007G167100 Sobic003G343500--Sobic007G167100 Sobic003G370700 Sobic003G370700 Sobic003G343500--Sobic003G370700 Sobic003G343500--Sobic002G193100 Sobic003G343500--Sobic010G176200 Sobic010G058200 Sobic010G058200 Sobic003G343500--Sobic010G058200 Sobic004G026500 Sobic004G026500 Sobic002G193100--Sobic004G026500 Sobic002G193100--Sobic010G196500 Sobic007G227700 Sobic007G227700 Sobic002G193100--Sobic007G227700 Sobic007G169300 Sobic007G169300 Sobic002G193100--Sobic007G169300 Sobic002G276100 Sobic002G276100 Sobic002G193100--Sobic002G276100 Sobic002G193100--Sobic006G065600 Sobic002G193100--Sobic003G343500 Sobic001G219700 Sobic001G219700 Sobic002G193100--Sobic001G219700 Sobic002G345700 Sobic002G345700 Sobic002G193100--Sobic002G345700 Sobic001G500800--Sobic001G488700 Sobic001G500800--Sobic010G196500 Sobic001G500800--Sobic001G381200 Sobic006G213500 Sobic006G213500 Sobic001G500800--Sobic006G213500 Sobic002G001000 Sobic002G001000 Sobic001G500800--Sobic002G001000 Sobic001G500800--Sobic002G187700 Sobic003G403500 Sobic003G403500 Sobic001G500800--Sobic003G403500 Sobic003G302800 Sobic003G302800 Sobic001G500800--Sobic003G302800 Sobic006G175800 Sobic006G175800 Sobic001G500800--Sobic006G175800 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic001G352400 Sobic001G352400 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic001G333800 Sobic001G333800 Sobic004G169000--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic004G169000--Sobic006G175800 Sobic004G169000--Sobic003G229300 Sobic004G169000--Sobic004G042200 Sobic005G106600 Sobic005G106600 Sobic004G169000--Sobic005G106600 Sobic007G160700 Sobic007G160700 Sobic001G476700--Sobic007G160700 Sobic004G103000 Sobic004G103000 Sobic001G476700--Sobic004G103000 Sobic001G476700--Sobic004G169000 Sobic001G476700--Sobic004G118200 Sobic001G476700--Sobic003G229300 Sobic007G190000 Sobic007G190000 Sobic001G476700--Sobic007G190000 Sobic010G074300 Sobic010G074300 Sobic001G476700--Sobic010G074300 Sobic001G476700--Sobic002G386100 Sobic004G179300 Sobic004G179300 Sobic001G476700--Sobic004G179300 Sobic004G118200--Sobic010G074300 Sobic004G118200--Sobic003G229300 Sobic004G118200--Sobic002G386100 Sobic004G118200--Sobic001G268200 Sobic002G130800 Sobic002G130800 Sobic004G118200--Sobic002G130800 Sobic004G118200--Sobic001G476700 Sobic010G147100 Sobic010G147100 Sobic004G118200--Sobic010G147100 Sobic010G013800 Sobic010G013800 Sobic004G118200--Sobic010G013800 Sobic004G118200--Sobic006G133900
Octagon: transcription factors


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