Gene annotation
Transcriptome id Sobic.001G476700.1,Sobic.001G476700.3,Sobic.001G476700.2
Synonym Sb01g044660
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt A0A1Z5SAZ5 , A0A1Z5SAZ8 , A0A1B6QQ16
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF80
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G65380 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g08900.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053728 , Zm00025a001018 , Zm00025a031207 , Zm00025a013140
Brachypodium KQK01430 , KQK23215 , PNT68299 , KQJ98686
Barley HORVU7Hr1G027270.11 , HORVU7Hr1G027270.10 , HORVU7Hr1G027270.13 , HORVU7Hr1G027270.12 , HORVU2Hr1G051540.3 , HORVU5Hr1G045360.7 , HORVU5Hr1G045360.6 , HORVU5Hr1G086830.3 , HORVU5Hr1G086830.4 , HORVU5Hr1G086830.6 , HORVU5Hr1G086830.7 , HORVU5Hr1G086830.8 , HORVU7Hr1G027270.1 , HORVU7Hr1G027270.3 , HORVU7Hr1G027270.2 , HORVU7Hr1G027270.5 , HORVU7Hr1G027270.4 , HORVU7Hr1G027270.7 , HORVU7Hr1G027270.6 , HORVU4Hr1G078230.2 , HORVU4Hr1G078230.3 , HORVU4Hr1G078230.1 , HORVU4Hr1G078230.6 , HORVU4Hr1G078230.7 , HORVU4Hr1G078230.4 , HORVU4Hr1G078230.5 , HORVU4Hr1G078230.8 , HORVU4Hr1G078230.9 , HORVU5Hr1G045360.16 , HORVU2Hr1G051540.2 , HORVU2Hr1G051540.1 , HORVU4Hr1G078230.10 , HORVU5Hr1G069900.3 , HORVU5Hr1G069900.6 , HORVU5Hr1G069900.5
Wheat TraesCS3A02G265100 , TraesCS7B02G030600 , TraesCS5D02G150100 , TraesCS7A02G130300 , TraesCS7D02G129700 , TraesCS4D02G302500 , TraesCS5A02G349100 , TraesCS4A02G404500 , TraesCS5A02G349000 , TraesCS5D02G355500 , TraesCS4B02G304300
Populus -


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cDNA sequences
Sobic.001G476700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G160700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
3 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
4 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
5 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
6 Sobic.007G190000 expressed protein -
7 Sobic.010G074300 smr domain containing protein, expressed -
8 Sobic.002G386100 expressed protein -
9 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
10 Sobic.010G196500 zinc-binding protein, putative, expressed -
11 Sobic.001G381200 vacuolar-sorting receptor precursor, putative, expressed -
12 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
13 Sobic.002G187700 expressed protein -
14 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
15 Sobic.006G133900 NIN, putative, expressed -
16 Sobic.001G333800 MYB family transcription factor, putative, expressed -
17 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
18 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
19 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin


Gene co-expression network
sample Sobic001G476700 Sobic001G476700 Sobic007G160700 Sobic007G160700 Sobic001G476700--Sobic007G160700 Sobic004G103000 Sobic004G103000 Sobic001G476700--Sobic004G103000 Sobic004G169000 Sobic004G169000 Sobic001G476700--Sobic004G169000 Sobic004G118200 Sobic004G118200 Sobic001G476700--Sobic004G118200 Sobic003G229300 Sobic003G229300 Sobic001G476700--Sobic003G229300 Sobic007G190000 Sobic007G190000 Sobic001G476700--Sobic007G190000 Sobic010G074300 Sobic010G074300 Sobic001G476700--Sobic010G074300 Sobic002G386100 Sobic002G386100 Sobic001G476700--Sobic002G386100 Sobic004G179300 Sobic004G179300 Sobic001G476700--Sobic004G179300 Sobic007G160700--Sobic001G476700 Sobic001G333800 Sobic001G333800 Sobic007G160700--Sobic001G333800 Sobic001G303200 Sobic001G303200 Sobic007G160700--Sobic001G303200 Sobic007G090900 Sobic007G090900 Sobic007G160700--Sobic007G090900 Sobic001G394800 Sobic001G394800 Sobic007G160700--Sobic001G394800 Sobic007G167100 Sobic007G167100 Sobic007G160700--Sobic007G167100 Sobic004G312600 Sobic004G312600 Sobic007G160700--Sobic004G312600 Sobic009G103000 Sobic009G103000 Sobic007G160700--Sobic009G103000 Sobic001G207800 Sobic001G207800 Sobic007G160700--Sobic001G207800 Sobic001G243200 Sobic001G243200 Sobic004G103000--Sobic001G243200 Sobic006G259600 Sobic006G259600 Sobic004G103000--Sobic006G259600 Sobic008G167600 Sobic008G167600 Sobic004G103000--Sobic008G167600 Sobic001G352400 Sobic001G352400 Sobic004G103000--Sobic001G352400 Sobic004G103000--Sobic001G476700 Sobic004G103000--Sobic004G169000 Sobic004G103000--Sobic010G074300 Sobic004G103000--Sobic001G333800 Sobic005G106600 Sobic005G106600 Sobic004G103000--Sobic005G106600 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic004G169000--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic006G175800 Sobic006G175800 Sobic004G169000--Sobic006G175800 Sobic004G169000--Sobic003G229300 Sobic004G042200 Sobic004G042200 Sobic004G169000--Sobic004G042200 Sobic004G169000--Sobic005G106600 Sobic004G118200--Sobic010G074300 Sobic004G118200--Sobic003G229300 Sobic004G118200--Sobic002G386100 Sobic001G268200 Sobic001G268200 Sobic004G118200--Sobic001G268200 Sobic002G130800 Sobic002G130800 Sobic004G118200--Sobic002G130800 Sobic004G118200--Sobic001G476700 Sobic010G147100 Sobic010G147100 Sobic004G118200--Sobic010G147100 Sobic010G013800 Sobic010G013800 Sobic004G118200--Sobic010G013800 Sobic006G133900 Sobic006G133900 Sobic004G118200--Sobic006G133900 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic003G229300--Sobic006G133900 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic007G190000--Sobic010G074300 Sobic007G190000--Sobic004G179300 Sobic003G372500 Sobic003G372500 Sobic007G190000--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic007G190000--Sobic010G227100 Sobic002G146300 Sobic002G146300 Sobic007G190000--Sobic002G146300 Sobic010G020800 Sobic010G020800 Sobic007G190000--Sobic010G020800 Sobic009G074400 Sobic009G074400 Sobic007G190000--Sobic009G074400 Sobic007G190000--Sobic010G147100 Sobic004G189200 Sobic004G189200 Sobic007G190000--Sobic004G189200 Sobic010G074300--Sobic010G147100 Sobic010G074300--Sobic004G118200 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic002G311100 Sobic002G311100 Sobic010G074300--Sobic002G311100 Sobic010G131900 Sobic010G131900 Sobic010G074300--Sobic010G131900 Sobic010G074300--Sobic009G074400 Sobic003G316500 Sobic003G316500 Sobic010G074300--Sobic003G316500 Sobic010G074300--Sobic001G268200 Sobic002G386100--Sobic004G179300 Sobic002G386100--Sobic004G118200 Sobic010G196500 Sobic010G196500 Sobic002G386100--Sobic010G196500 Sobic002G386100--Sobic001G476700 Sobic002G187700 Sobic002G187700 Sobic002G386100--Sobic002G187700 Sobic002G386100--Sobic007G190000 Sobic002G386100--Sobic003G372500 Sobic002G128200 Sobic002G128200 Sobic002G386100--Sobic002G128200 Sobic001G488700 Sobic001G488700 Sobic002G386100--Sobic001G488700 Sobic004G179300--Sobic002G386100 Sobic004G179300--Sobic007G190000 Sobic004G179300--Sobic002G128200 Sobic004G179300--Sobic004G189200 Sobic006G002300 Sobic006G002300 Sobic004G179300--Sobic006G002300 Sobic004G179300--Sobic002G187700 Sobic004G179300--Sobic001G476700 Sobic003G301900 Sobic003G301900 Sobic004G179300--Sobic003G301900 Sobic004G179300--Sobic010G020800
Octagon: transcription factors


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