Gene annotation
Transcriptome id Sobic.006G257800.1
Synonym ARP8, ATARP8, Sb06g032115
Functional annotation actin-6, putative, expressed
UniProt C5YA12
Pfam PF12937 PF00022
Panther DB PTHR11937 PTHR11937:SF161
NCBI CDD KOG0676; Actin and related proteins
KEGG Orthology K16616; actin-related protein 8, plant
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56180 : actin-related protein 8
RAP-DB (Rice) LOC_Os04g57210.1 : actin-6, putative, expressed
MaizeGDB (Corn) Zm00025a009385
Brachypodium KQJ85184 , KQJ85183
Barley HORVU2Hr1G118290.3 , HORVU2Hr1G118290.2 , HORVU2Hr1G118290.1
Wheat TraesCS2D02G541300 , TraesCS2B02G570000 , TraesCS2A02G539700 , TraesCS2A02G539700
Populus -


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cDNA sequences
Sobic.006G257800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G167600 VTC2, putative, expressed -
2 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
3 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
4 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
5 Sobic.001G062300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde oxidase, putative, expressed K11817: indole-3-acetaldehyde oxidase
6 Sobic.010G177400 dehydrogenase/reductase SDR family member 12, putative, expressed K11168: dehydrogenase/reductase SDR family member 12
7 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
8 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
9 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
10 Sobic.006G275100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
11 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
12 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
13 Sobic.007G190000 expressed protein -
14 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
15 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
16 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
17 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
19 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
20 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G257800 Sobic006G257800 Sobic008G167600 Sobic008G167600 Sobic006G257800--Sobic008G167600 Sobic004G189200 Sobic004G189200 Sobic006G257800--Sobic004G189200 Sobic003G198800 Sobic003G198800 Sobic006G257800--Sobic003G198800 Sobic002G383600 Sobic002G383600 Sobic006G257800--Sobic002G383600 Sobic001G062300 Sobic001G062300 Sobic006G257800--Sobic001G062300 Sobic010G177400 Sobic010G177400 Sobic006G257800--Sobic010G177400 Sobic002G295100 Sobic002G295100 Sobic006G257800--Sobic002G295100 Sobic006G051800 Sobic006G051800 Sobic006G257800--Sobic006G051800 Sobic002G341000 Sobic002G341000 Sobic006G257800--Sobic002G341000 Sobic008G167600--Sobic006G257800 Sobic004G151300 Sobic004G151300 Sobic008G167600--Sobic004G151300 Sobic002G291800 Sobic002G291800 Sobic008G167600--Sobic002G291800 Sobic004G312600 Sobic004G312600 Sobic008G167600--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic002G081400 Sobic002G081400 Sobic008G167600--Sobic002G081400 Sobic006G090100 Sobic006G090100 Sobic008G167600--Sobic006G090100 Sobic001G333800 Sobic001G333800 Sobic008G167600--Sobic001G333800 Sobic004G189200--Sobic006G257800 Sobic004G189200--Sobic001G062300 Sobic004G189200--Sobic006G051800 Sobic004G189200--Sobic008G167600 Sobic007G190000 Sobic007G190000 Sobic004G189200--Sobic007G190000 Sobic004G231900 Sobic004G231900 Sobic004G189200--Sobic004G231900 Sobic003G301500 Sobic003G301500 Sobic004G189200--Sobic003G301500 Sobic004G189200--Sobic002G383600 Sobic004G179300 Sobic004G179300 Sobic004G189200--Sobic004G179300 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic001G128300 Sobic001G128300 Sobic003G198800--Sobic001G128300 Sobic001G481900 Sobic001G481900 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic002G383600--Sobic006G257800 Sobic010G227100 Sobic010G227100 Sobic002G383600--Sobic010G227100 Sobic002G383600--Sobic006G051800 Sobic002G383600--Sobic009G074400 Sobic004G001500 Sobic004G001500 Sobic002G383600--Sobic004G001500 Sobic003G107500 Sobic003G107500 Sobic002G383600--Sobic003G107500 Sobic002G383600--Sobic004G189200 Sobic006G275100 Sobic006G275100 Sobic002G383600--Sobic006G275100 Sobic002G383600--Sobic007G190000 Sobic001G062300--Sobic006G257800 Sobic001G062300--Sobic004G189200 Sobic001G062300--Sobic006G275100 Sobic001G062300--Sobic008G167600 Sobic001G062300--Sobic007G190000 Sobic004G211866 Sobic004G211866 Sobic001G062300--Sobic004G211866 Sobic001G062300--Sobic003G301500 Sobic010G272800 Sobic010G272800 Sobic001G062300--Sobic010G272800 Sobic001G062300--Sobic002G383600 Sobic010G177400--Sobic006G257800 Sobic001G021000 Sobic001G021000 Sobic010G177400--Sobic001G021000 Sobic003G190400 Sobic003G190400 Sobic010G177400--Sobic003G190400 Sobic010G177400--Sobic008G167600 Sobic010G177400--Sobic010G227100 Sobic010G177400--Sobic007G190000 Sobic010G177400--Sobic003G198800 Sobic010G177400--Sobic002G383600 Sobic010G177400--Sobic002G341000 Sobic004G323400 Sobic004G323400 Sobic002G295100--Sobic004G323400 Sobic001G331600 Sobic001G331600 Sobic002G295100--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic002G295100--Sobic001G485100 Sobic002G295100--Sobic002G293500 Sobic002G295100--Sobic004G312600 Sobic001G046000 Sobic001G046000 Sobic002G295100--Sobic001G046000 Sobic009G225600 Sobic009G225600 Sobic002G295100--Sobic009G225600 Sobic002G295100--Sobic006G257800 Sobic003G162400 Sobic003G162400 Sobic002G295100--Sobic003G162400 Sobic003G029500 Sobic003G029500 Sobic006G051800--Sobic003G029500 Sobic006G051800--Sobic009G074400 Sobic006G051800--Sobic004G231900 Sobic006G051800--Sobic002G383600 Sobic006G219600 Sobic006G219600 Sobic006G051800--Sobic006G219600 Sobic006G051800--Sobic004G189200 Sobic006G051800--Sobic006G257800 Sobic005G201000 Sobic005G201000 Sobic006G051800--Sobic005G201000 Sobic006G051800--Sobic008G167600 Sobic002G341000--Sobic004G151300 Sobic004G169000 Sobic004G169000 Sobic002G341000--Sobic004G169000 Sobic003G271400 Sobic003G271400 Sobic002G341000--Sobic003G271400 Sobic002G341000--Sobic006G257800 Sobic003G191700 Sobic003G191700 Sobic002G341000--Sobic003G191700 Sobic002G341000--Sobic008G167600 Sobic001G207800 Sobic001G207800 Sobic002G341000--Sobic001G207800 Sobic002G341000--Sobic004G312600 Sobic003G264800 Sobic003G264800 Sobic002G341000--Sobic003G264800
Octagon: transcription factors


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