Gene annotation
Transcriptome id Sobic.006G051800.1
Synonym
Functional annotation calmodulin-binding transcription activator 4, putative, expressed
UniProt A0A1Z5RCD5
Pfam PF13637 PF01833 PF00612 PF03859
Panther DB PTHR23335 PTHR23335:SF1
NCBI CDD KOG0520; Uncharacterized conserved protein, contains IPT/TIG domain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G67310 : Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
RAP-DB (Rice) LOC_Os04g31900.1 : calmodulin-binding transcription activator 4, putative, expressed
MaizeGDB (Corn) Zm00025a055898 , Zm00025a011767
Brachypodium KQJ82279 , KQJ82278
Barley HORVU2Hr1G069950.13 , HORVU2Hr1G069950.14 , HORVU2Hr1G069950.9 , HORVU2Hr1G069950.8 , HORVU2Hr1G069950.3 , HORVU2Hr1G069950.1 , HORVU2Hr1G069950.7 , HORVU2Hr1G069950.6 , HORVU2Hr1G069950.4 , HORVU2Hr1G069950.12 , HORVU2Hr1G069950.11 , HORVU2Hr1G069950.10 , HORVU2Hr1G069950.15
Wheat TraesCS2A02G283800 , TraesCS2D02G282800 , TraesCS2D02G282800 , TraesCS2D02G282800 , TraesCS2D02G282800 , TraesCS2D02G282800 , TraesCS2D02G282800 , TraesCS2B02G300800 , TraesCS2B02G300800 , TraesCS2A02G283800 , TraesCS2A02G283800 , TraesCS2A02G283800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
2 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
4 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
5 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
6 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
8 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
9 Sobic.008G167600 VTC2, putative, expressed -
10 Sobic.002G198200 expressed protein K03128: transcription initiation factor TFIID subunit 2
11 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
12 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
13 Sobic.007G190000 expressed protein -
14 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
15 Sobic.001G298900 agenet domain containing protein, putative, expressed -
16 Sobic.009G162600 OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
17 Sobic.008G060000 receptor-like protein kinase 2 precursor, putative, expressed -
18 Sobic.004G146600 lipase, putative, expressed -
19 Sobic.010G092350 - -
20 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12


Gene co-expression network
sample Sobic006G051800 Sobic006G051800 Sobic003G029500 Sobic003G029500 Sobic006G051800--Sobic003G029500 Sobic009G074400 Sobic009G074400 Sobic006G051800--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic006G051800--Sobic004G231900 Sobic002G383600 Sobic002G383600 Sobic006G051800--Sobic002G383600 Sobic006G219600 Sobic006G219600 Sobic006G051800--Sobic006G219600 Sobic004G189200 Sobic004G189200 Sobic006G051800--Sobic004G189200 Sobic006G257800 Sobic006G257800 Sobic006G051800--Sobic006G257800 Sobic005G201000 Sobic005G201000 Sobic006G051800--Sobic005G201000 Sobic008G167600 Sobic008G167600 Sobic006G051800--Sobic008G167600 Sobic003G029500--Sobic005G201000 Sobic005G132000 Sobic005G132000 Sobic003G029500--Sobic005G132000 Sobic003G029500--Sobic006G051800 Sobic009G040400 Sobic009G040400 Sobic003G029500--Sobic009G040400 Sobic003G003450 Sobic003G003450 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic010G092350 Sobic010G092350 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100 Sobic003G316500 Sobic003G316500 Sobic009G074400--Sobic003G316500 Sobic001G534700 Sobic001G534700 Sobic009G074400--Sobic001G534700 Sobic003G155100 Sobic003G155100 Sobic009G074400--Sobic003G155100 Sobic003G198800 Sobic003G198800 Sobic009G074400--Sobic003G198800 Sobic002G311100 Sobic002G311100 Sobic009G074400--Sobic002G311100 Sobic009G074400--Sobic006G051800 Sobic009G074400--Sobic006G219600 Sobic008G001200 Sobic008G001200 Sobic009G074400--Sobic008G001200 Sobic004G001500 Sobic004G001500 Sobic009G074400--Sobic004G001500 Sobic004G231900--Sobic006G219600 Sobic004G231900--Sobic006G051800 Sobic004G231900--Sobic009G074400 Sobic004G146600 Sobic004G146600 Sobic004G231900--Sobic004G146600 Sobic004G231900--Sobic008G167600 Sobic004G231900--Sobic004G001500 Sobic001G446850 Sobic001G446850 Sobic004G231900--Sobic001G446850 Sobic004G231900--Sobic004G189200 Sobic004G231900--Sobic004G312600 Sobic002G383600--Sobic006G257800 Sobic010G227100 Sobic010G227100 Sobic002G383600--Sobic010G227100 Sobic002G383600--Sobic006G051800 Sobic002G383600--Sobic009G074400 Sobic002G383600--Sobic004G001500 Sobic003G107500 Sobic003G107500 Sobic002G383600--Sobic003G107500 Sobic002G383600--Sobic004G189200 Sobic006G275100 Sobic006G275100 Sobic002G383600--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic002G383600--Sobic007G190000 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic004G189200--Sobic006G257800 Sobic001G062300 Sobic001G062300 Sobic004G189200--Sobic001G062300 Sobic004G189200--Sobic006G051800 Sobic004G189200--Sobic008G167600 Sobic004G189200--Sobic007G190000 Sobic004G189200--Sobic004G231900 Sobic003G301500 Sobic003G301500 Sobic004G189200--Sobic003G301500 Sobic004G189200--Sobic002G383600 Sobic004G179300 Sobic004G179300 Sobic004G189200--Sobic004G179300 Sobic006G257800--Sobic008G167600 Sobic006G257800--Sobic004G189200 Sobic006G257800--Sobic003G198800 Sobic006G257800--Sobic002G383600 Sobic006G257800--Sobic001G062300 Sobic010G177400 Sobic010G177400 Sobic006G257800--Sobic010G177400 Sobic002G295100 Sobic002G295100 Sobic006G257800--Sobic002G295100 Sobic006G257800--Sobic006G051800 Sobic002G341000 Sobic002G341000 Sobic006G257800--Sobic002G341000 Sobic005G201000--Sobic003G029500 Sobic005G201000--Sobic005G132000 Sobic005G201000--Sobic009G040400 Sobic005G201000--Sobic006G051800 Sobic007G010800 Sobic007G010800 Sobic005G201000--Sobic007G010800 Sobic010G150100 Sobic010G150100 Sobic005G201000--Sobic010G150100 Sobic005G201000--Sobic010G092350 Sobic003G057233 Sobic003G057233 Sobic005G201000--Sobic003G057233 Sobic005G201000--Sobic001G298900 Sobic008G167600--Sobic006G257800 Sobic004G151300 Sobic004G151300 Sobic008G167600--Sobic004G151300 Sobic002G291800 Sobic002G291800 Sobic008G167600--Sobic002G291800 Sobic008G167600--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic002G081400 Sobic002G081400 Sobic008G167600--Sobic002G081400 Sobic006G090100 Sobic006G090100 Sobic008G167600--Sobic006G090100 Sobic001G333800 Sobic001G333800 Sobic008G167600--Sobic001G333800
Octagon: transcription factors


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