Gene annotation
Transcriptome id Sobic.005G132000.1,Sobic.005G132000.2
Synonym auxin response factor, HSS, SbARF11, Sb05g019540, ARF2, ARF1-BP, ORE14
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt A0A1Z5RID8 , A0A1Z5RIW5
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT5G62000 : auxin response factor 2
RAP-DB (Rice) LOC_Os11g32110.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a029826
Brachypodium KQJ88394 , KQJ88395 , KQJ99896 , KQJ99895 , KQK11324 , KQJ88393 , KQJ88396
Barley -
Wheat -
Populus PNT10516


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cDNA sequences
Sobic.005G132000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
2 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
3 Sobic.009G259100 CCT motif family protein, expressed -
4 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
5 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
6 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
7 Sobic.010G132600 selenoprotein O, putative, expressed -
8 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
9 Sobic.003G003450 - K01177: beta-amylase
10 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5
11 Sobic.001G122900 expressed protein -
12 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
13 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
14 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
15 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
16 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
17 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
18 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
19 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
20 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase


Gene co-expression network
sample Sobic005G132000 Sobic005G132000 Sobic003G029500 Sobic003G029500 Sobic005G132000--Sobic003G029500 Sobic005G201000 Sobic005G201000 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic009G040400 Sobic009G040400 Sobic005G132000--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic003G029500--Sobic005G201000 Sobic003G029500--Sobic005G132000 Sobic006G051800 Sobic006G051800 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic010G092350 Sobic010G092350 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100 Sobic005G201000--Sobic003G029500 Sobic005G201000--Sobic005G132000 Sobic005G201000--Sobic009G040400 Sobic005G201000--Sobic006G051800 Sobic005G201000--Sobic007G010800 Sobic010G150100 Sobic010G150100 Sobic005G201000--Sobic010G150100 Sobic005G201000--Sobic010G092350 Sobic003G057233 Sobic003G057233 Sobic005G201000--Sobic003G057233 Sobic001G298900 Sobic001G298900 Sobic005G201000--Sobic001G298900 Sobic002G275100 Sobic002G275100 Sobic009G259100--Sobic002G275100 Sobic003G380200 Sobic003G380200 Sobic009G259100--Sobic003G380200 Sobic004G344600 Sobic004G344600 Sobic009G259100--Sobic004G344600 Sobic004G267700 Sobic004G267700 Sobic009G259100--Sobic004G267700 Sobic010G100900 Sobic010G100900 Sobic009G259100--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic009G259100--Sobic003G304300 Sobic007G121300 Sobic007G121300 Sobic009G259100--Sobic007G121300 Sobic002G351200 Sobic002G351200 Sobic009G259100--Sobic002G351200 Sobic002G161400 Sobic002G161400 Sobic009G259100--Sobic002G161400 Sobic009G040400--Sobic007G010800 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic009G040400--Sobic005G201000 Sobic009G040400--Sobic003G029500 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic007G010800--Sobic002G356900 Sobic001G018000 Sobic001G018000 Sobic007G010800--Sobic001G018000 Sobic007G010800--Sobic010G100900 Sobic007G010800--Sobic009G040400 Sobic007G010800--Sobic002G351200 Sobic007G010800--Sobic003G003450 Sobic004G268400 Sobic004G268400 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic003G186800 Sobic003G186800 Sobic007G010800--Sobic003G186800 Sobic001G057700 Sobic001G057700 Sobic007G146400--Sobic001G057700 Sobic007G146400--Sobic005G132000 Sobic006G257800 Sobic006G257800 Sobic007G146400--Sobic006G257800 Sobic002G383600 Sobic002G383600 Sobic007G146400--Sobic002G383600 Sobic007G146400--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic007G146400--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic007G146400--Sobic004G231900 Sobic003G339700 Sobic003G339700 Sobic007G146400--Sobic003G339700 Sobic002G417300 Sobic002G417300 Sobic007G146400--Sobic002G417300 Sobic002G257750 Sobic002G257750 Sobic010G132600--Sobic002G257750 Sobic004G146600 Sobic004G146600 Sobic010G132600--Sobic004G146600 Sobic010G132600--Sobic005G106600 Sobic010G132600--Sobic005G132000 Sobic004G356700 Sobic004G356700 Sobic010G132600--Sobic004G356700 Sobic010G132600--Sobic003G057233 Sobic003G398700 Sobic003G398700 Sobic010G132600--Sobic003G398700 Sobic010G132600--Sobic003G029500 Sobic010G132600--Sobic004G231900 Sobic004G323400 Sobic004G323400 Sobic002G295100--Sobic004G323400 Sobic001G331600 Sobic001G331600 Sobic002G295100--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic002G295100--Sobic001G485100 Sobic002G293500 Sobic002G293500 Sobic002G295100--Sobic002G293500 Sobic002G295100--Sobic004G312600 Sobic001G046000 Sobic001G046000 Sobic002G295100--Sobic001G046000 Sobic009G225600 Sobic009G225600 Sobic002G295100--Sobic009G225600 Sobic002G295100--Sobic006G257800 Sobic003G162400 Sobic003G162400 Sobic002G295100--Sobic003G162400 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800
Octagon: transcription factors


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