Gene annotation
Transcriptome id Sobic.005G201000.1
Synonym Sodium Proton Antiporter 1, NHX2, Sb05g025700, ATNHX2, SbNHX1
Functional annotation - (PubMedID : 29751546)
transporter, monovalent cation:proton antiporter-2 family, putative, expressed
UniProt C5Y722
Pfam PF00999
Panther DB PTHR10110 PTHR10110:SF113
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015299solute:proton antiporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT3G05030 : sodium hydrogen exchanger 2
RAP-DB (Rice) LOC_Os11g42790.1 : transporter, monovalent cation:proton antiporter-2 family, putative, expressed
MaizeGDB (Corn) Zm00025a048446 , Zm00025a029218
Brachypodium KQJ84555 , KQJ87491
Barley HORVU4Hr1G033760.11 , HORVU4Hr1G033760.10 , HORVU4Hr1G033760.5 , HORVU4Hr1G033760.4 , HORVU4Hr1G033760.7 , HORVU4Hr1G033760.6 , HORVU4Hr1G033760.1 , HORVU4Hr1G033760.3 , HORVU4Hr1G033760.2 , HORVU4Hr1G033760.9 , HORVU4Hr1G033760.8
Wheat TraesCS4A02G145300 , TraesCS4B02G125700 , TraesCS4B02G125700 , TraesCS4D02G147600 , TraesCS4D02G147600
Populus -


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cDNA sequences
Sobic.005G201000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
2 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
3 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
4 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
5 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
6 Sobic.010G150100 expressed protein -
7 Sobic.010G092350 - -
8 Sobic.003G057233 - -
9 Sobic.001G298900 agenet domain containing protein, putative, expressed -
10 Sobic.009G259100 CCT motif family protein, expressed -
11 Sobic.002G198200 expressed protein K03128: transcription initiation factor TFIID subunit 2
12 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
13 Sobic.008G167600 VTC2, putative, expressed -
14 Sobic.003G003450 - K01177: beta-amylase
15 Sobic.003G298200 dehydrogenase, putative, expressed -
16 Sobic.004G146600 lipase, putative, expressed -
17 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
18 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
19 Sobic.007G111400 - -
20 Sobic.003G220100 - -


Gene co-expression network
sample Sobic005G201000 Sobic005G201000 Sobic003G029500 Sobic003G029500 Sobic005G201000--Sobic003G029500 Sobic005G132000 Sobic005G132000 Sobic005G201000--Sobic005G132000 Sobic009G040400 Sobic009G040400 Sobic005G201000--Sobic009G040400 Sobic006G051800 Sobic006G051800 Sobic005G201000--Sobic006G051800 Sobic007G010800 Sobic007G010800 Sobic005G201000--Sobic007G010800 Sobic010G150100 Sobic010G150100 Sobic005G201000--Sobic010G150100 Sobic010G092350 Sobic010G092350 Sobic005G201000--Sobic010G092350 Sobic003G057233 Sobic003G057233 Sobic005G201000--Sobic003G057233 Sobic001G298900 Sobic001G298900 Sobic005G201000--Sobic001G298900 Sobic003G029500--Sobic005G201000 Sobic003G029500--Sobic005G132000 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G003450 Sobic003G003450 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic005G132000--Sobic009G040400 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic005G132000--Sobic003G003450 Sobic009G040400--Sobic007G010800 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic009G040400--Sobic005G201000 Sobic009G040400--Sobic003G029500 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic006G051800--Sobic003G029500 Sobic009G074400 Sobic009G074400 Sobic006G051800--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic006G051800--Sobic004G231900 Sobic002G383600 Sobic002G383600 Sobic006G051800--Sobic002G383600 Sobic006G219600 Sobic006G219600 Sobic006G051800--Sobic006G219600 Sobic004G189200 Sobic004G189200 Sobic006G051800--Sobic004G189200 Sobic006G257800 Sobic006G257800 Sobic006G051800--Sobic006G257800 Sobic006G051800--Sobic005G201000 Sobic008G167600 Sobic008G167600 Sobic006G051800--Sobic008G167600 Sobic007G010800--Sobic002G356900 Sobic001G018000 Sobic001G018000 Sobic007G010800--Sobic001G018000 Sobic010G100900 Sobic010G100900 Sobic007G010800--Sobic010G100900 Sobic007G010800--Sobic009G040400 Sobic002G351200 Sobic002G351200 Sobic007G010800--Sobic002G351200 Sobic007G010800--Sobic003G003450 Sobic004G268400 Sobic004G268400 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic003G186800 Sobic003G186800 Sobic007G010800--Sobic003G186800 Sobic004G151300 Sobic004G151300 Sobic010G150100--Sobic004G151300 Sobic010G150100--Sobic004G312600 Sobic001G331600 Sobic001G331600 Sobic010G150100--Sobic001G331600 Sobic001G345100 Sobic001G345100 Sobic010G150100--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic010G150100--Sobic004G143300 Sobic004G127800 Sobic004G127800 Sobic010G150100--Sobic004G127800 Sobic002G043800 Sobic002G043800 Sobic010G150100--Sobic002G043800 Sobic007G227100 Sobic007G227100 Sobic010G150100--Sobic007G227100 Sobic010G150100--Sobic003G003450 Sobic010G223200 Sobic010G223200 Sobic010G092350--Sobic010G223200 Sobic010G092350--Sobic009G040400 Sobic010G207100 Sobic010G207100 Sobic010G092350--Sobic010G207100 Sobic004G300100 Sobic004G300100 Sobic010G092350--Sobic004G300100 Sobic010G092350--Sobic002G356900 Sobic004G271600 Sobic004G271600 Sobic010G092350--Sobic004G271600 Sobic010G092350--Sobic003G029500 Sobic002G060800 Sobic002G060800 Sobic010G092350--Sobic002G060800 Sobic002G291800 Sobic002G291800 Sobic010G092350--Sobic002G291800 Sobic001G394800 Sobic001G394800 Sobic003G057233--Sobic001G394800 Sobic001G169900 Sobic001G169900 Sobic003G057233--Sobic001G169900 Sobic001G198100 Sobic001G198100 Sobic003G057233--Sobic001G198100 Sobic003G017100 Sobic003G017100 Sobic003G057233--Sobic003G017100 Sobic004G258700 Sobic004G258700 Sobic003G057233--Sobic004G258700 Sobic010G248700 Sobic010G248700 Sobic003G057233--Sobic010G248700 Sobic003G057233--Sobic010G132600 Sobic010G002700 Sobic010G002700 Sobic003G057233--Sobic010G002700 Sobic006G219150 Sobic006G219150 Sobic003G057233--Sobic006G219150 Sobic001G230000 Sobic001G230000 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic003G155100 Sobic003G155100 Sobic001G298900--Sobic003G155100 Sobic008G044100 Sobic008G044100 Sobic001G298900--Sobic008G044100 Sobic003G388100 Sobic003G388100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600
Octagon: transcription factors


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