Gene annotation
Transcriptome id Sobic.006G275100.5,Sobic.006G275100.20,Sobic.006G275100.10,Sobic.006G275100.14,Sobic.006G275100.19,Sobic.006G275100.9,Sobic.006G275100.13,Sobic.006G275100.11,Sobic.006G275100.3,Sobic.006G275100.6,Sobic.006G275100.7,Sobic.006G275100.18,Sobic.006G275100.2,Sobic.006G275100.4,Sobic.006G275100.17,Sobic.006G275100.8,Sobic.006G275100.12,Sobic.006G275100.15,Sobic.006G275100.21,Sobic.006G275100.1,Sobic.006G275100.16
Synonym ATMTM1, MTM1, Sb06g033650
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
mitochondrial carrier protein, putative, expressed
UniProt A0A1B6PP97 , A0A1Z5RFU1 , A0A1Z5RFT0 , A0A1B6PP84 , A0A1Z5RFR2 , A0A1Z5RGW3 , A0A1Z5RFR0 , A0A1Z5RFT9 , A0A1Z5RFS6 , A0A1Z5RGH1 , A0A1Z5RFX7 , A0A1B6PP77 , A0A1Z5RGG1 , A0A1Z5RFU3 , A0A1B6PPA4 , A0A1Z5RFS1
Pfam PF00153
Panther DB PTHR24089 PTHR24089:SF397
NCBI CDD KOG0761; Mitochondrial carrier protein CGI-69 KOG0758Mitochondrial carnitine-acylcarnitine carrier protein
KEGG Orthology K15119; solute carrier family 25, member 39/40
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27940 : manganese tracking factor for mitochondrial SOD2
RAP-DB (Rice) LOC_Os01g12470.1,LOC_Os08g29720.2,LOC_Os08g29720.1 : mitochondrial carrier protein, putative, expressed
MaizeGDB (Corn) Zm00025a057471
Brachypodium KQK03364 , KQK03363
Barley HORVU3Hr1G030340.11 , HORVU3Hr1G030340.10 , HORVU3Hr1G030340.13 , HORVU3Hr1G030340.12 , HORVU3Hr1G030340.15 , HORVU3Hr1G030340.14 , HORVU3Hr1G030340.17 , HORVU3Hr1G030340.16 , HORVU3Hr1G030340.19 , HORVU3Hr1G030340.18 , HORVU3Hr1G030340.7 , HORVU3Hr1G030340.9 , HORVU3Hr1G030340.8 , HORVU3Hr1G030340.24 , HORVU3Hr1G030340.20 , HORVU3Hr1G030340.21 , HORVU3Hr1G030340.22 , HORVU3Hr1G030340.23
Wheat TraesCS3B02G176600 , TraesCS3B02G176600 , TraesCS3A02G149300 , TraesCS3D02G157400 , TraesCS3A02G149300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
2 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
3 Sobic.001G062300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde oxidase, putative, expressed K11817: indole-3-acetaldehyde oxidase
4 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
5 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.003G372500 DUF803 domain containing, putative, expressed -
7 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
8 Sobic.001G481900 SAC domain containing protein, putative, expressed -
9 Sobic.001G214100 expressed protein -
10 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
11 Sobic.007G190000 expressed protein -
12 Sobic.002G243800 BPI/LBP family protein At3g20270 precursor, putative, expressed -
13 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
14 Sobic.003G275700 myosin head family protein, expressed K10357: myosin V
15 Sobic.008G167600 VTC2, putative, expressed -
16 Sobic.009G161550 - -
17 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
18 Sobic.004G143475 - -
19 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.003G301500 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K17623: PUDP, pseudouridine 5'-phosphatase


Gene co-expression network
sample Sobic006G275100 Sobic006G275100 Sobic010G227100 Sobic010G227100 Sobic006G275100--Sobic010G227100 Sobic006G257800 Sobic006G257800 Sobic006G275100--Sobic006G257800 Sobic001G062300 Sobic001G062300 Sobic006G275100--Sobic001G062300 Sobic002G383600 Sobic002G383600 Sobic006G275100--Sobic002G383600 Sobic004G189200 Sobic004G189200 Sobic006G275100--Sobic004G189200 Sobic003G372500 Sobic003G372500 Sobic006G275100--Sobic003G372500 Sobic003G198800 Sobic003G198800 Sobic006G275100--Sobic003G198800 Sobic001G481900 Sobic001G481900 Sobic006G275100--Sobic001G481900 Sobic001G214100 Sobic001G214100 Sobic006G275100--Sobic001G214100 Sobic002G243800 Sobic002G243800 Sobic010G227100--Sobic002G243800 Sobic010G227100--Sobic002G383600 Sobic010G227100--Sobic003G372500 Sobic010G227100--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic010G227100--Sobic007G190000 Sobic007G075400 Sobic007G075400 Sobic010G227100--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G227100--Sobic002G146300 Sobic009G074400 Sobic009G074400 Sobic010G227100--Sobic009G074400 Sobic009G053900 Sobic009G053900 Sobic010G227100--Sobic009G053900 Sobic008G167600 Sobic008G167600 Sobic006G257800--Sobic008G167600 Sobic006G257800--Sobic004G189200 Sobic006G257800--Sobic003G198800 Sobic006G257800--Sobic002G383600 Sobic006G257800--Sobic001G062300 Sobic010G177400 Sobic010G177400 Sobic006G257800--Sobic010G177400 Sobic002G295100 Sobic002G295100 Sobic006G257800--Sobic002G295100 Sobic006G051800 Sobic006G051800 Sobic006G257800--Sobic006G051800 Sobic002G341000 Sobic002G341000 Sobic006G257800--Sobic002G341000 Sobic001G062300--Sobic006G257800 Sobic001G062300--Sobic004G189200 Sobic001G062300--Sobic006G275100 Sobic001G062300--Sobic008G167600 Sobic001G062300--Sobic007G190000 Sobic004G211866 Sobic004G211866 Sobic001G062300--Sobic004G211866 Sobic003G301500 Sobic003G301500 Sobic001G062300--Sobic003G301500 Sobic010G272800 Sobic010G272800 Sobic001G062300--Sobic010G272800 Sobic001G062300--Sobic002G383600 Sobic002G383600--Sobic006G257800 Sobic002G383600--Sobic010G227100 Sobic002G383600--Sobic006G051800 Sobic002G383600--Sobic009G074400 Sobic004G001500 Sobic004G001500 Sobic002G383600--Sobic004G001500 Sobic003G107500 Sobic003G107500 Sobic002G383600--Sobic003G107500 Sobic002G383600--Sobic004G189200 Sobic002G383600--Sobic006G275100 Sobic002G383600--Sobic007G190000 Sobic004G189200--Sobic006G257800 Sobic004G189200--Sobic001G062300 Sobic004G189200--Sobic006G051800 Sobic004G189200--Sobic008G167600 Sobic004G189200--Sobic007G190000 Sobic004G231900 Sobic004G231900 Sobic004G189200--Sobic004G231900 Sobic004G189200--Sobic003G301500 Sobic004G189200--Sobic002G383600 Sobic004G179300 Sobic004G179300 Sobic004G189200--Sobic004G179300 Sobic003G372500--Sobic007G075400 Sobic010G147100 Sobic010G147100 Sobic003G372500--Sobic010G147100 Sobic003G316500 Sobic003G316500 Sobic003G372500--Sobic003G316500 Sobic001G050200 Sobic001G050200 Sobic003G372500--Sobic001G050200 Sobic009G191000 Sobic009G191000 Sobic003G372500--Sobic009G191000 Sobic003G372500--Sobic010G227100 Sobic001G534700 Sobic001G534700 Sobic003G372500--Sobic001G534700 Sobic003G313500 Sobic003G313500 Sobic003G372500--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic003G372500--Sobic001G390800 Sobic003G198800--Sobic001G534700 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic001G128300 Sobic001G128300 Sobic003G198800--Sobic001G128300 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic002G187700 Sobic002G187700 Sobic001G481900--Sobic002G187700 Sobic004G306500 Sobic004G306500 Sobic001G481900--Sobic004G306500 Sobic001G481900--Sobic003G198800 Sobic001G481900--Sobic003G372500 Sobic001G481900--Sobic010G147100 Sobic003G115900 Sobic003G115900 Sobic001G481900--Sobic003G115900 Sobic008G059100 Sobic008G059100 Sobic001G481900--Sobic008G059100 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic001G214100--Sobic001G481900 Sobic001G214100--Sobic006G275100 Sobic007G106800 Sobic007G106800 Sobic001G214100--Sobic007G106800 Sobic006G002300 Sobic006G002300 Sobic001G214100--Sobic006G002300 Sobic004G169000 Sobic004G169000 Sobic001G214100--Sobic004G169000 Sobic001G214100--Sobic008G151100 Sobic001G214100--Sobic003G115900 Sobic001G214100--Sobic003G198800 Sobic001G214100--Sobic006G257800
Octagon: transcription factors


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