Gene annotation
Transcriptome id Sobic.003G242000.1
Synonym Sb03g029880, LACS4
Functional annotation AMP-binding enzyme, putative, expressed
UniProt C5XFA1
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF187
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G23850 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os01g46750.1 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a028200
Brachypodium KQK09008
Barley HORVU3Hr1G059140.14 , HORVU3Hr1G059140.15 , HORVU3Hr1G059140.16 , HORVU3Hr1G059140.17 , HORVU3Hr1G059140.10 , HORVU3Hr1G059140.11 , HORVU3Hr1G059140.12 , HORVU3Hr1G059140.13 , HORVU3Hr1G059140.18 , HORVU3Hr1G059140.19 , HORVU3Hr1G059140.21 , HORVU3Hr1G059140.20 , HORVU3Hr1G059140.23 , HORVU3Hr1G059140.22 , HORVU3Hr1G059140.25 , HORVU3Hr1G059140.24 , HORVU3Hr1G059140.26 , HORVU3Hr1G059140.8 , HORVU3Hr1G059140.9 , HORVU3Hr1G059140.6 , HORVU3Hr1G059140.7 , HORVU3Hr1G059140.4 , HORVU3Hr1G059140.5 , HORVU3Hr1G059140.2 , HORVU3Hr1G059140.3 , HORVU3Hr1G059140.1
Wheat TraesCS3A02G237700 , TraesCS3A02G237700 , TraesCS3A02G237700 , TraesCS3B02G266100 , TraesCS3D02G237900 , TraesCS3D02G237900
Populus -


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cDNA sequences
Sobic.003G242000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
2 Sobic.002G262300 lecithine cholesterol acyltransferase, putative, expressed -
3 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
4 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
5 Sobic.001G064200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.008G152600 LIM domain-containing protein, putative, expressed -
7 Sobic.001G409300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphatidylinositol transfer protein alpha isoform, putative, expressed -
8 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
9 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G187700 expressed protein -
12 Sobic.001G214100 expressed protein -
13 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
14 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
15 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
16 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
17 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
19 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.001G481900 SAC domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G242000 Sobic003G242000 Sobic003G198800 Sobic003G198800 Sobic003G242000--Sobic003G198800 Sobic002G262300 Sobic002G262300 Sobic003G242000--Sobic002G262300 Sobic003G115900 Sobic003G115900 Sobic003G242000--Sobic003G115900 Sobic002G383600 Sobic002G383600 Sobic003G242000--Sobic002G383600 Sobic001G064200 Sobic001G064200 Sobic003G242000--Sobic001G064200 Sobic008G152600 Sobic008G152600 Sobic003G242000--Sobic008G152600 Sobic001G409300 Sobic001G409300 Sobic003G242000--Sobic001G409300 Sobic008G059100 Sobic008G059100 Sobic003G242000--Sobic008G059100 Sobic006G002300 Sobic006G002300 Sobic003G242000--Sobic006G002300 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic001G128300 Sobic001G128300 Sobic003G198800--Sobic001G128300 Sobic001G481900 Sobic001G481900 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic007G210500 Sobic007G210500 Sobic002G262300--Sobic007G210500 Sobic009G080400 Sobic009G080400 Sobic002G262300--Sobic009G080400 Sobic001G305500 Sobic001G305500 Sobic002G262300--Sobic001G305500 Sobic006G104600 Sobic006G104600 Sobic002G262300--Sobic006G104600 Sobic002G128200 Sobic002G128200 Sobic002G262300--Sobic002G128200 Sobic003G320700 Sobic003G320700 Sobic002G262300--Sobic003G320700 Sobic001G517800 Sobic001G517800 Sobic002G262300--Sobic001G517800 Sobic002G262300--Sobic003G242000 Sobic001G062300 Sobic001G062300 Sobic002G262300--Sobic001G062300 Sobic002G187700 Sobic002G187700 Sobic003G115900--Sobic002G187700 Sobic003G115900--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic003G115900--Sobic001G381600 Sobic003G115900--Sobic006G002300 Sobic004G091100 Sobic004G091100 Sobic003G115900--Sobic004G091100 Sobic003G115900--Sobic009G074400 Sobic003G115900--Sobic001G481900 Sobic001G107600 Sobic001G107600 Sobic003G115900--Sobic001G107600 Sobic010G139600 Sobic010G139600 Sobic003G115900--Sobic010G139600 Sobic002G383600--Sobic006G257800 Sobic010G227100 Sobic010G227100 Sobic002G383600--Sobic010G227100 Sobic006G051800 Sobic006G051800 Sobic002G383600--Sobic006G051800 Sobic002G383600--Sobic009G074400 Sobic004G001500 Sobic004G001500 Sobic002G383600--Sobic004G001500 Sobic003G107500 Sobic003G107500 Sobic002G383600--Sobic003G107500 Sobic004G189200 Sobic004G189200 Sobic002G383600--Sobic004G189200 Sobic006G275100 Sobic006G275100 Sobic002G383600--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic002G383600--Sobic007G190000 Sobic004G312600 Sobic004G312600 Sobic001G064200--Sobic004G312600 Sobic010G074300 Sobic010G074300 Sobic001G064200--Sobic010G074300 Sobic003G191700 Sobic003G191700 Sobic001G064200--Sobic003G191700 Sobic001G064200--Sobic006G257800 Sobic004G281800 Sobic004G281800 Sobic001G064200--Sobic004G281800 Sobic010G251300 Sobic010G251300 Sobic001G064200--Sobic010G251300 Sobic001G064200--Sobic003G198800 Sobic001G064200--Sobic006G002300 Sobic001G064200--Sobic008G151100 Sobic009G200800 Sobic009G200800 Sobic008G152600--Sobic009G200800 Sobic001G446200 Sobic001G446200 Sobic008G152600--Sobic001G446200 Sobic008G047400 Sobic008G047400 Sobic008G152600--Sobic008G047400 Sobic008G152600--Sobic003G242000 Sobic001G328200 Sobic001G328200 Sobic008G152600--Sobic001G328200 Sobic003G051000 Sobic003G051000 Sobic008G152600--Sobic003G051000 Sobic008G124900 Sobic008G124900 Sobic008G152600--Sobic008G124900 Sobic002G311100 Sobic002G311100 Sobic008G152600--Sobic002G311100 Sobic007G164000 Sobic007G164000 Sobic008G152600--Sobic007G164000 Sobic001G409300--Sobic008G059100 Sobic004G211900 Sobic004G211900 Sobic001G409300--Sobic004G211900 Sobic001G409300--Sobic003G242000 Sobic001G217400 Sobic001G217400 Sobic001G409300--Sobic001G217400 Sobic010G272200 Sobic010G272200 Sobic001G409300--Sobic010G272200 Sobic003G051600 Sobic003G051600 Sobic001G409300--Sobic003G051600 Sobic003G269800 Sobic003G269800 Sobic001G409300--Sobic003G269800 Sobic003G397500 Sobic003G397500 Sobic001G409300--Sobic003G397500 Sobic009G136100 Sobic009G136100 Sobic001G409300--Sobic009G136100 Sobic001G488700 Sobic001G488700 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic006G002300--Sobic003G198800 Sobic006G002300--Sobic001G381600 Sobic006G002300--Sobic002G187700 Sobic006G002300--Sobic003G115900 Sobic006G002300--Sobic002G128200 Sobic007G198300 Sobic007G198300 Sobic006G002300--Sobic007G198300 Sobic003G301900 Sobic003G301900 Sobic006G002300--Sobic003G301900 Sobic003G229300 Sobic003G229300 Sobic006G002300--Sobic003G229300 Sobic001G375100 Sobic001G375100 Sobic006G002300--Sobic001G375100
Octagon: transcription factors


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