Gene annotation
Transcriptome id Sobic.008G152600.1
Synonym Sb08g020170, DAR1
Functional annotation LIM domain-containing protein, putative, expressed
UniProt C5YR05
Pfam PF12315 PF00412 PF02809
Panther DB PTHR24209:SF11 PTHR24209
NCBI CDD KOG1703; Adaptor protein Enigma and related PDZ-LIM proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G36860 : LIM domain-containing protein
RAP-DB (Rice) LOC_Os12g40490.1 : LIM domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004553 , Zm00025a007370
Brachypodium KQJ85985 , KQJ85988 , KQJ85989 , KQJ85984 , KQJ85986 , KQJ85987
Barley HORVU5Hr1G016350.21 , HORVU5Hr1G016350.20 , HORVU5Hr1G016350.1 , HORVU5Hr1G016350.2 , HORVU5Hr1G016350.3 , HORVU5Hr1G016350.4 , HORVU5Hr1G016350.5 , HORVU5Hr1G016350.6 , HORVU5Hr1G016350.9 , HORVU5Hr1G016350.12 , HORVU5Hr1G016350.13 , HORVU5Hr1G016350.10 , HORVU5Hr1G016350.16 , HORVU5Hr1G016350.17 , HORVU5Hr1G016350.18 , HORVU5Hr1G016350.19 , HORVU0Hr1G028930.1 , HORVU0Hr1G028930.2 , HORVU5Hr1G016350.11 , HORVU5Hr1G016350.14 , HORVU5Hr1G016350.15
Wheat TraesCS5B02G071300 , TraesCS5D02G072300 , TraesCS5D02G072300 , TraesCS5D02G072300 , TraesCS5A02G060800 , TraesCS5A02G060800 , TraesCS5A02G060800
Populus PNT02912 , PNT02913


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cDNA sequences
Sobic.008G152600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G200800 protein kinase domain containing protein, expressed -
2 Sobic.001G446200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@clathrin adaptor complex small chain domain containing protein, expressed K12399: AP-3 complex subunit sigma
3 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
4 Sobic.003G242000 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
5 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
6 Sobic.003G051000 expressed protein -
7 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
8 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
10 Sobic.010G059000 ANTH/ENTH domain containing protein, putative, expressed -
11 Sobic.003G006300 expressed protein -
12 Sobic.010G251300 OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed K08869: ADCK, aarF domain-containing kinase
13 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
14 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
15 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
16 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
17 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.001G064200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.010G074300 smr domain containing protein, expressed -
20 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -


Gene co-expression network
sample Sobic008G152600 Sobic008G152600 Sobic009G200800 Sobic009G200800 Sobic008G152600--Sobic009G200800 Sobic001G446200 Sobic001G446200 Sobic008G152600--Sobic001G446200 Sobic008G047400 Sobic008G047400 Sobic008G152600--Sobic008G047400 Sobic003G242000 Sobic003G242000 Sobic008G152600--Sobic003G242000 Sobic001G328200 Sobic001G328200 Sobic008G152600--Sobic001G328200 Sobic003G051000 Sobic003G051000 Sobic008G152600--Sobic003G051000 Sobic008G124900 Sobic008G124900 Sobic008G152600--Sobic008G124900 Sobic002G311100 Sobic002G311100 Sobic008G152600--Sobic002G311100 Sobic007G164000 Sobic007G164000 Sobic008G152600--Sobic007G164000 Sobic009G200800--Sobic008G152600 Sobic010G251300 Sobic010G251300 Sobic009G200800--Sobic010G251300 Sobic003G309200 Sobic003G309200 Sobic009G200800--Sobic003G309200 Sobic009G200800--Sobic008G124900 Sobic009G231200 Sobic009G231200 Sobic009G200800--Sobic009G231200 Sobic001G333600 Sobic001G333600 Sobic009G200800--Sobic001G333600 Sobic009G180500 Sobic009G180500 Sobic009G200800--Sobic009G180500 Sobic009G200800--Sobic008G047400 Sobic010G249100 Sobic010G249100 Sobic009G200800--Sobic010G249100 Sobic001G446200--Sobic008G152600 Sobic003G354900 Sobic003G354900 Sobic001G446200--Sobic003G354900 Sobic001G446200--Sobic008G047400 Sobic004G255700 Sobic004G255700 Sobic001G446200--Sobic004G255700 Sobic001G193300 Sobic001G193300 Sobic001G446200--Sobic001G193300 Sobic001G446200--Sobic009G200800 Sobic008G140100 Sobic008G140100 Sobic001G446200--Sobic008G140100 Sobic001G446200--Sobic007G164000 Sobic001G446200--Sobic003G051000 Sobic008G047400--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic008G047400--Sobic010G278200 Sobic006G033200 Sobic006G033200 Sobic008G047400--Sobic006G033200 Sobic004G202500 Sobic004G202500 Sobic008G047400--Sobic004G202500 Sobic003G302900 Sobic003G302900 Sobic008G047400--Sobic003G302900 Sobic010G074300 Sobic010G074300 Sobic008G047400--Sobic010G074300 Sobic008G047400--Sobic004G255700 Sobic010G147100 Sobic010G147100 Sobic008G047400--Sobic010G147100 Sobic008G047400--Sobic003G309200 Sobic003G198800 Sobic003G198800 Sobic003G242000--Sobic003G198800 Sobic002G262300 Sobic002G262300 Sobic003G242000--Sobic002G262300 Sobic003G115900 Sobic003G115900 Sobic003G242000--Sobic003G115900 Sobic002G383600 Sobic002G383600 Sobic003G242000--Sobic002G383600 Sobic001G064200 Sobic001G064200 Sobic003G242000--Sobic001G064200 Sobic003G242000--Sobic008G152600 Sobic001G409300 Sobic001G409300 Sobic003G242000--Sobic001G409300 Sobic008G059100 Sobic008G059100 Sobic003G242000--Sobic008G059100 Sobic006G002300 Sobic006G002300 Sobic003G242000--Sobic006G002300 Sobic010G188100 Sobic010G188100 Sobic001G328200--Sobic010G188100 Sobic009G219900 Sobic009G219900 Sobic001G328200--Sobic009G219900 Sobic006G092400 Sobic006G092400 Sobic001G328200--Sobic006G092400 Sobic010G101500 Sobic010G101500 Sobic001G328200--Sobic010G101500 Sobic003G002400 Sobic003G002400 Sobic001G328200--Sobic003G002400 Sobic003G312200 Sobic003G312200 Sobic001G328200--Sobic003G312200 Sobic002G358800 Sobic002G358800 Sobic001G328200--Sobic002G358800 Sobic007G139700 Sobic007G139700 Sobic001G328200--Sobic007G139700 Sobic002G166900 Sobic002G166900 Sobic001G328200--Sobic002G166900 Sobic003G051000--Sobic007G164000 Sobic001G057700 Sobic001G057700 Sobic003G051000--Sobic001G057700 Sobic004G169000 Sobic004G169000 Sobic003G051000--Sobic004G169000 Sobic005G084800 Sobic005G084800 Sobic003G051000--Sobic005G084800 Sobic010G236300 Sobic010G236300 Sobic003G051000--Sobic010G236300 Sobic001G498000 Sobic001G498000 Sobic003G051000--Sobic001G498000 Sobic003G043300 Sobic003G043300 Sobic003G051000--Sobic003G043300 Sobic002G187700 Sobic002G187700 Sobic003G051000--Sobic002G187700 Sobic003G355900 Sobic003G355900 Sobic003G051000--Sobic003G355900 Sobic007G093800 Sobic007G093800 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic007G164000--Sobic003G051000 Sobic007G164000--Sobic002G187700 Sobic001G481900 Sobic001G481900 Sobic007G164000--Sobic001G481900 Sobic003G190400 Sobic003G190400 Sobic007G164000--Sobic003G190400 Sobic001G128300 Sobic001G128300 Sobic007G164000--Sobic001G128300 Sobic007G164000--Sobic008G059100 Sobic007G164000--Sobic003G198800 Sobic001G390200 Sobic001G390200 Sobic007G164000--Sobic001G390200 Sobic007G164000--Sobic001G057700
Octagon: transcription factors


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