Gene annotation
Transcriptome id Sobic.001G446200.1
Synonym Sb01g041930
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
clathrin adaptor complex small chain domain containing protein, expressed
UniProt C5WRQ2
Pfam PF01217
Panther DB PTHR11753 PTHR11753:SF2
NCBI CDD KOG0936; Clathrin adaptor complex, small subunit
KEGG Orthology K12399; AP-3 complex subunit sigma
Gene Ontology GO:0015031; protein transport GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT3G50860 : Clathrin adaptor complex small chain family protein
RAP-DB (Rice) LOC_Os03g12710.1 : clathrin adaptor complex small chain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052967
Brachypodium KQK22736 , KQK22735 , KQK22734
Barley -
Wheat TraesCS4D02G235600 , TraesCS4A02G078400 , TraesCS4B02G234400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G152600 LIM domain-containing protein, putative, expressed -
2 Sobic.003G354900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulator of chromosome condensation, putative, expressed -
3 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
4 Sobic.004G255700 sucrase-related, putative, expressed -
5 Sobic.001G193300 TBC domain containing protein, expressed -
6 Sobic.009G200800 protein kinase domain containing protein, expressed -
7 Sobic.008G140100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
8 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
9 Sobic.003G051000 expressed protein -
10 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
11 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
12 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
13 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
14 Sobic.003G242000 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
15 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
16 Sobic.001G426800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed -
17 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
18 Sobic.003G354600 csAtPR5, putative, expressed -
19 Sobic.009G068500 expressed protein -
20 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ


Gene co-expression network
sample Sobic001G446200 Sobic001G446200 Sobic008G152600 Sobic008G152600 Sobic001G446200--Sobic008G152600 Sobic003G354900 Sobic003G354900 Sobic001G446200--Sobic003G354900 Sobic008G047400 Sobic008G047400 Sobic001G446200--Sobic008G047400 Sobic004G255700 Sobic004G255700 Sobic001G446200--Sobic004G255700 Sobic001G193300 Sobic001G193300 Sobic001G446200--Sobic001G193300 Sobic009G200800 Sobic009G200800 Sobic001G446200--Sobic009G200800 Sobic008G140100 Sobic008G140100 Sobic001G446200--Sobic008G140100 Sobic007G164000 Sobic007G164000 Sobic001G446200--Sobic007G164000 Sobic003G051000 Sobic003G051000 Sobic001G446200--Sobic003G051000 Sobic008G152600--Sobic009G200800 Sobic008G152600--Sobic001G446200 Sobic008G152600--Sobic008G047400 Sobic003G242000 Sobic003G242000 Sobic008G152600--Sobic003G242000 Sobic001G328200 Sobic001G328200 Sobic008G152600--Sobic001G328200 Sobic008G152600--Sobic003G051000 Sobic008G124900 Sobic008G124900 Sobic008G152600--Sobic008G124900 Sobic002G311100 Sobic002G311100 Sobic008G152600--Sobic002G311100 Sobic008G152600--Sobic007G164000 Sobic003G354900--Sobic001G446200 Sobic003G425500 Sobic003G425500 Sobic003G354900--Sobic003G425500 Sobic009G190700 Sobic009G190700 Sobic003G354900--Sobic009G190700 Sobic010G019000 Sobic010G019000 Sobic003G354900--Sobic010G019000 Sobic001G390200 Sobic001G390200 Sobic003G354900--Sobic001G390200 Sobic001G352400 Sobic001G352400 Sobic003G354900--Sobic001G352400 Sobic001G391300 Sobic001G391300 Sobic003G354900--Sobic001G391300 Sobic004G219400 Sobic004G219400 Sobic003G354900--Sobic004G219400 Sobic003G354900--Sobic008G152600 Sobic008G047400--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic008G047400--Sobic010G278200 Sobic006G033200 Sobic006G033200 Sobic008G047400--Sobic006G033200 Sobic004G202500 Sobic004G202500 Sobic008G047400--Sobic004G202500 Sobic003G302900 Sobic003G302900 Sobic008G047400--Sobic003G302900 Sobic010G074300 Sobic010G074300 Sobic008G047400--Sobic010G074300 Sobic008G047400--Sobic004G255700 Sobic010G147100 Sobic010G147100 Sobic008G047400--Sobic010G147100 Sobic003G309200 Sobic003G309200 Sobic008G047400--Sobic003G309200 Sobic004G255700--Sobic008G047400 Sobic002G343300 Sobic002G343300 Sobic004G255700--Sobic002G343300 Sobic004G255700--Sobic001G193300 Sobic009G135900 Sobic009G135900 Sobic004G255700--Sobic009G135900 Sobic004G255700--Sobic001G446200 Sobic004G255700--Sobic006G033200 Sobic004G255700--Sobic004G202500 Sobic006G034500 Sobic006G034500 Sobic004G255700--Sobic006G034500 Sobic009G219900 Sobic009G219900 Sobic004G255700--Sobic009G219900 Sobic009G068500 Sobic009G068500 Sobic001G193300--Sobic009G068500 Sobic008G089100 Sobic008G089100 Sobic001G193300--Sobic008G089100 Sobic004G257100 Sobic004G257100 Sobic001G193300--Sobic004G257100 Sobic002G359400 Sobic002G359400 Sobic001G193300--Sobic002G359400 Sobic008G033500 Sobic008G033500 Sobic001G193300--Sobic008G033500 Sobic001G193300--Sobic004G202500 Sobic003G176000 Sobic003G176000 Sobic001G193300--Sobic003G176000 Sobic001G007000 Sobic001G007000 Sobic001G193300--Sobic001G007000 Sobic001G193300--Sobic008G124900 Sobic009G200800--Sobic008G152600 Sobic010G251300 Sobic010G251300 Sobic009G200800--Sobic010G251300 Sobic009G200800--Sobic003G309200 Sobic009G200800--Sobic008G124900 Sobic009G231200 Sobic009G231200 Sobic009G200800--Sobic009G231200 Sobic001G333600 Sobic001G333600 Sobic009G200800--Sobic001G333600 Sobic009G180500 Sobic009G180500 Sobic009G200800--Sobic009G180500 Sobic009G200800--Sobic008G047400 Sobic010G249100 Sobic010G249100 Sobic009G200800--Sobic010G249100 Sobic008G140100--Sobic003G051000 Sobic001G303100 Sobic001G303100 Sobic008G140100--Sobic001G303100 Sobic010G059000 Sobic010G059000 Sobic008G140100--Sobic010G059000 Sobic008G140100--Sobic001G446200 Sobic007G062200 Sobic007G062200 Sobic008G140100--Sobic007G062200 Sobic008G140100--Sobic009G200800 Sobic008G140100--Sobic007G164000 Sobic003G339700 Sobic003G339700 Sobic008G140100--Sobic003G339700 Sobic001G498000 Sobic001G498000 Sobic008G140100--Sobic001G498000 Sobic007G164000--Sobic003G051000 Sobic002G187700 Sobic002G187700 Sobic007G164000--Sobic002G187700 Sobic001G481900 Sobic001G481900 Sobic007G164000--Sobic001G481900 Sobic003G190400 Sobic003G190400 Sobic007G164000--Sobic003G190400 Sobic001G128300 Sobic001G128300 Sobic007G164000--Sobic001G128300 Sobic008G059100 Sobic008G059100 Sobic007G164000--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic007G164000--Sobic003G198800 Sobic007G164000--Sobic001G390200 Sobic001G057700 Sobic001G057700 Sobic007G164000--Sobic001G057700 Sobic003G051000--Sobic007G164000 Sobic003G051000--Sobic001G057700 Sobic004G169000 Sobic004G169000 Sobic003G051000--Sobic004G169000 Sobic005G084800 Sobic005G084800 Sobic003G051000--Sobic005G084800 Sobic010G236300 Sobic010G236300 Sobic003G051000--Sobic010G236300 Sobic003G051000--Sobic001G498000 Sobic003G043300 Sobic003G043300 Sobic003G051000--Sobic003G043300 Sobic003G051000--Sobic002G187700 Sobic003G355900 Sobic003G355900 Sobic003G051000--Sobic003G355900
Octagon: transcription factors


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