Gene annotation
Transcriptome id Sobic.001G426800.3,Sobic.001G426800.1,Sobic.001G426800.4,Sobic.001G426800.5,Sobic.001G426800.6,Sobic.001G426800.2
Synonym Sb01g040100
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA recognition motif containing protein, expressed
UniProt A0A1Z5SAJ4 , A0A1B6QP76 , A0A1B6QP92
Pfam PF00076
Panther DB PTHR15241 PTHR15241:SF4
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily) KOG4207Predicted splicing factor, SR protein superfamily KOG0107Alternative splicing factor SRp20/9G8 (RRM superfamily) KOG0106Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) KOG4207Predicted splicing factor, SR protein superfamily
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G07350 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g15890.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a052796 , Zm00025a056198
Brachypodium -
Barley HORVU4Hr1G060940.5 , HORVU4Hr1G060940.8 , HORVU4Hr1G060940.10 , HORVU4Hr1G060940.19 , HORVU4Hr1G060940.18
Wheat TraesCS4B02G213400
Populus -


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cDNA sequences
Sobic.001G426800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G183101 - -
2 Sobic.009G069300 actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed -
3 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.009G180500 Myb-like DNA-binding domain containing protein, putative, expressed -
5 Sobic.004G276200 peptide transporter PTR2, putative, expressed -
6 Sobic.009G200800 protein kinase domain containing protein, expressed -
7 Sobic.006G150400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
9 Sobic.003G313900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
10 Sobic.002G381700 WD-40 repeat family protein, putative, expressed -
11 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
12 Sobic.002G417300 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.010G090301 - -
14 Sobic.002G229600 - -
15 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
16 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G315600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
18 Sobic.009G231200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein of unknown function DUF1421 domain containing protein, expressed -
19 Sobic.009G130900 "oxidoreductase, 2OG-Fe(II) oxygenase family protein"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
20 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit


Gene co-expression network
sample Sobic001G426800 Sobic001G426800 Sobic009G183101 Sobic009G183101 Sobic001G426800--Sobic009G183101 Sobic009G069300 Sobic009G069300 Sobic001G426800--Sobic009G069300 Sobic003G339700 Sobic003G339700 Sobic001G426800--Sobic003G339700 Sobic009G180500 Sobic009G180500 Sobic001G426800--Sobic009G180500 Sobic004G276200 Sobic004G276200 Sobic001G426800--Sobic004G276200 Sobic009G200800 Sobic009G200800 Sobic001G426800--Sobic009G200800 Sobic006G150400 Sobic006G150400 Sobic001G426800--Sobic006G150400 Sobic004G323400 Sobic004G323400 Sobic001G426800--Sobic004G323400 Sobic003G313900 Sobic003G313900 Sobic001G426800--Sobic003G313900 Sobic009G183101--Sobic001G426800 Sobic009G183101--Sobic009G069300 Sobic009G183101--Sobic004G276200 Sobic004G315600 Sobic004G315600 Sobic009G183101--Sobic004G315600 Sobic002G417300 Sobic002G417300 Sobic009G183101--Sobic002G417300 Sobic009G183101--Sobic003G339700 Sobic009G183101--Sobic004G323400 Sobic009G195800 Sobic009G195800 Sobic009G183101--Sobic009G195800 Sobic010G090301 Sobic010G090301 Sobic009G183101--Sobic010G090301 Sobic009G069300--Sobic009G183101 Sobic009G069300--Sobic001G426800 Sobic009G069300--Sobic003G339700 Sobic009G069300--Sobic002G417300 Sobic009G069300--Sobic004G276200 Sobic003G425500 Sobic003G425500 Sobic009G069300--Sobic003G425500 Sobic004G332100 Sobic004G332100 Sobic009G069300--Sobic004G332100 Sobic002G368700 Sobic002G368700 Sobic009G069300--Sobic002G368700 Sobic009G069300--Sobic006G150400 Sobic003G339700--Sobic002G417300 Sobic003G381700 Sobic003G381700 Sobic003G339700--Sobic003G381700 Sobic008G187100 Sobic008G187100 Sobic003G339700--Sobic008G187100 Sobic007G146400 Sobic007G146400 Sobic003G339700--Sobic007G146400 Sobic001G160800 Sobic001G160800 Sobic003G339700--Sobic001G160800 Sobic003G334000 Sobic003G334000 Sobic003G339700--Sobic003G334000 Sobic001G057700 Sobic001G057700 Sobic003G339700--Sobic001G057700 Sobic003G339700--Sobic009G069300 Sobic006G066800 Sobic006G066800 Sobic003G339700--Sobic006G066800 Sobic003G309200 Sobic003G309200 Sobic009G180500--Sobic003G309200 Sobic009G231200 Sobic009G231200 Sobic009G180500--Sobic009G231200 Sobic002G293300 Sobic002G293300 Sobic009G180500--Sobic002G293300 Sobic009G180500--Sobic009G200800 Sobic003G002400 Sobic003G002400 Sobic009G180500--Sobic003G002400 Sobic009G180500--Sobic001G426800 Sobic001G031600 Sobic001G031600 Sobic009G180500--Sobic001G031600 Sobic003G238000 Sobic003G238000 Sobic009G180500--Sobic003G238000 Sobic001G358300 Sobic001G358300 Sobic009G180500--Sobic001G358300 Sobic001G391300 Sobic001G391300 Sobic004G276200--Sobic001G391300 Sobic004G276200--Sobic009G183101 Sobic008G014200 Sobic008G014200 Sobic004G276200--Sobic008G014200 Sobic004G276200--Sobic003G339700 Sobic010G212100 Sobic010G212100 Sobic004G276200--Sobic010G212100 Sobic004G097300 Sobic004G097300 Sobic004G276200--Sobic004G097300 Sobic004G276200--Sobic010G090301 Sobic004G276200--Sobic009G069300 Sobic002G321300 Sobic002G321300 Sobic004G276200--Sobic002G321300 Sobic008G152600 Sobic008G152600 Sobic009G200800--Sobic008G152600 Sobic010G251300 Sobic010G251300 Sobic009G200800--Sobic010G251300 Sobic009G200800--Sobic003G309200 Sobic008G124900 Sobic008G124900 Sobic009G200800--Sobic008G124900 Sobic009G200800--Sobic009G231200 Sobic001G333600 Sobic001G333600 Sobic009G200800--Sobic001G333600 Sobic009G200800--Sobic009G180500 Sobic008G047400 Sobic008G047400 Sobic009G200800--Sobic008G047400 Sobic010G249100 Sobic010G249100 Sobic009G200800--Sobic010G249100 Sobic006G150400--Sobic003G339700 Sobic006G150400--Sobic001G426800 Sobic009G066900 Sobic009G066900 Sobic006G150400--Sobic009G066900 Sobic010G272200 Sobic010G272200 Sobic006G150400--Sobic010G272200 Sobic006G150400--Sobic009G069300 Sobic006G150400--Sobic001G391300 Sobic006G150400--Sobic009G183101 Sobic003G036600 Sobic003G036600 Sobic006G150400--Sobic003G036600 Sobic006G150400--Sobic004G276200 Sobic004G323400--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic004G323400--Sobic002G295100 Sobic003G188200 Sobic003G188200 Sobic004G323400--Sobic003G188200 Sobic001G104900 Sobic001G104900 Sobic004G323400--Sobic001G104900 Sobic003G440300 Sobic003G440300 Sobic004G323400--Sobic003G440300 Sobic003G425300 Sobic003G425300 Sobic004G323400--Sobic003G425300 Sobic006G041000 Sobic006G041000 Sobic004G323400--Sobic006G041000 Sobic004G282900 Sobic004G282900 Sobic004G323400--Sobic004G282900 Sobic002G291800 Sobic002G291800 Sobic004G323400--Sobic002G291800 Sobic001G292000 Sobic001G292000 Sobic003G313900--Sobic001G292000 Sobic003G313900--Sobic006G066800 Sobic001G498000 Sobic001G498000 Sobic003G313900--Sobic001G498000 Sobic009G190700 Sobic009G190700 Sobic003G313900--Sobic009G190700 Sobic002G381700 Sobic002G381700 Sobic003G313900--Sobic002G381700 Sobic003G313900--Sobic004G323400 Sobic003G313900--Sobic002G417300 Sobic003G313900--Sobic003G339700 Sobic003G313900--Sobic008G187100
Octagon: transcription factors


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