Gene annotation
Transcriptome id Sobic.002G381700.2
Synonym
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt A0A1W0W7C6
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF453
NCBI CDD KOG4532; WD40-like repeat containing protein KOG0266WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G78070 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g26870.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS2D02G168500 , TraesCS2B02G187400 , TraesCS2B02G187400 , TraesCS2B02G187400 , TraesCS2D02G168500 , TraesCS2D02G168500 , TraesCS2A02G161400 , TraesCS2A02G161400 , TraesCS2A02G161400 , TraesCS4B02G211500 , TraesCS4B02G211500 , TraesCS4B02G211500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G219400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
2 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
3 Sobic.001G498000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.008G064700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VTC2, putative, expressed K14190: GDP-L-galactose phosphorylase
5 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
6 Sobic.003G269300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
7 Sobic.003G313900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
8 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
9 Sobic.001G057700 heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
10 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
11 Sobic.004G322700 - -
12 Sobic.004G355700 C2 domain containing protein, putative, expressed -
13 Sobic.003G381700 DUF647 domain containing protein, putative, expressed -
14 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
15 Sobic.001G426800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed -
16 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
17 Sobic.002G382800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
19 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
20 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme


Gene co-expression network
sample Sobic002G381700 Sobic002G381700 Sobic004G219400 Sobic004G219400 Sobic002G381700--Sobic004G219400 Sobic002G295100 Sobic002G295100 Sobic002G381700--Sobic002G295100 Sobic001G498000 Sobic001G498000 Sobic002G381700--Sobic001G498000 Sobic008G064700 Sobic008G064700 Sobic002G381700--Sobic008G064700 Sobic003G425300 Sobic003G425300 Sobic002G381700--Sobic003G425300 Sobic003G269300 Sobic003G269300 Sobic002G381700--Sobic003G269300 Sobic003G313900 Sobic003G313900 Sobic002G381700--Sobic003G313900 Sobic004G323400 Sobic004G323400 Sobic002G381700--Sobic004G323400 Sobic001G057700 Sobic001G057700 Sobic002G381700--Sobic001G057700 Sobic004G219400--Sobic001G498000 Sobic004G219400--Sobic002G381700 Sobic003G391200 Sobic003G391200 Sobic004G219400--Sobic003G391200 Sobic001G017300 Sobic001G017300 Sobic004G219400--Sobic001G017300 Sobic009G015100 Sobic009G015100 Sobic004G219400--Sobic009G015100 Sobic006G130300 Sobic006G130300 Sobic004G219400--Sobic006G130300 Sobic004G355700 Sobic004G355700 Sobic004G219400--Sobic004G355700 Sobic001G514800 Sobic001G514800 Sobic004G219400--Sobic001G514800 Sobic008G149000 Sobic008G149000 Sobic004G219400--Sobic008G149000 Sobic002G295100--Sobic004G323400 Sobic001G331600 Sobic001G331600 Sobic002G295100--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic002G295100--Sobic001G485100 Sobic002G293500 Sobic002G293500 Sobic002G295100--Sobic002G293500 Sobic004G312600 Sobic004G312600 Sobic002G295100--Sobic004G312600 Sobic001G046000 Sobic001G046000 Sobic002G295100--Sobic001G046000 Sobic009G225600 Sobic009G225600 Sobic002G295100--Sobic009G225600 Sobic006G257800 Sobic006G257800 Sobic002G295100--Sobic006G257800 Sobic003G162400 Sobic003G162400 Sobic002G295100--Sobic003G162400 Sobic001G498000--Sobic004G219400 Sobic001G498000--Sobic006G130300 Sobic001G498000--Sobic003G391200 Sobic008G115900 Sobic008G115900 Sobic001G498000--Sobic008G115900 Sobic002G382700 Sobic002G382700 Sobic001G498000--Sobic002G382700 Sobic001G498000--Sobic001G017300 Sobic006G158100 Sobic006G158100 Sobic001G498000--Sobic006G158100 Sobic006G221000 Sobic006G221000 Sobic001G498000--Sobic006G221000 Sobic004G082300 Sobic004G082300 Sobic001G498000--Sobic004G082300 Sobic008G064700--Sobic003G269300 Sobic003G228300 Sobic003G228300 Sobic008G064700--Sobic003G228300 Sobic008G064700--Sobic002G382700 Sobic008G064700--Sobic006G221000 Sobic008G064700--Sobic001G485100 Sobic010G249700 Sobic010G249700 Sobic008G064700--Sobic010G249700 Sobic008G064700--Sobic001G046000 Sobic001G283100 Sobic001G283100 Sobic008G064700--Sobic001G283100 Sobic001G207800 Sobic001G207800 Sobic008G064700--Sobic001G207800 Sobic003G425300--Sobic004G323400 Sobic002G417300 Sobic002G417300 Sobic003G425300--Sobic002G417300 Sobic003G425300--Sobic002G295100 Sobic003G373600 Sobic003G373600 Sobic003G425300--Sobic003G373600 Sobic005G132000 Sobic005G132000 Sobic003G425300--Sobic005G132000 Sobic003G277400 Sobic003G277400 Sobic003G425300--Sobic003G277400 Sobic003G426900 Sobic003G426900 Sobic003G425300--Sobic003G426900 Sobic003G428600 Sobic003G428600 Sobic003G425300--Sobic003G428600 Sobic003G440300 Sobic003G440300 Sobic003G425300--Sobic003G440300 Sobic003G269300--Sobic008G064700 Sobic003G269300--Sobic009G225600 Sobic003G269300--Sobic001G485100 Sobic003G269300--Sobic001G046000 Sobic002G047400 Sobic002G047400 Sobic003G269300--Sobic002G047400 Sobic003G269300--Sobic003G228300 Sobic003G186800 Sobic003G186800 Sobic003G269300--Sobic003G186800 Sobic003G269300--Sobic006G221000 Sobic003G269300--Sobic001G207800 Sobic001G292000 Sobic001G292000 Sobic003G313900--Sobic001G292000 Sobic006G066800 Sobic006G066800 Sobic003G313900--Sobic006G066800 Sobic003G313900--Sobic001G498000 Sobic009G190700 Sobic009G190700 Sobic003G313900--Sobic009G190700 Sobic003G313900--Sobic002G381700 Sobic003G313900--Sobic004G323400 Sobic003G313900--Sobic002G417300 Sobic003G339700 Sobic003G339700 Sobic003G313900--Sobic003G339700 Sobic008G187100 Sobic008G187100 Sobic003G313900--Sobic008G187100 Sobic004G323400--Sobic002G417300 Sobic004G323400--Sobic002G295100 Sobic003G188200 Sobic003G188200 Sobic004G323400--Sobic003G188200 Sobic001G104900 Sobic001G104900 Sobic004G323400--Sobic001G104900 Sobic004G323400--Sobic003G440300 Sobic004G323400--Sobic003G425300 Sobic006G041000 Sobic006G041000 Sobic004G323400--Sobic006G041000 Sobic004G282900 Sobic004G282900 Sobic004G323400--Sobic004G282900 Sobic002G291800 Sobic002G291800 Sobic004G323400--Sobic002G291800 Sobic007G146400 Sobic007G146400 Sobic001G057700--Sobic007G146400 Sobic003G381700 Sobic003G381700 Sobic001G057700--Sobic003G381700 Sobic003G051000 Sobic003G051000 Sobic001G057700--Sobic003G051000 Sobic003G264800 Sobic003G264800 Sobic001G057700--Sobic003G264800 Sobic007G079400 Sobic007G079400 Sobic001G057700--Sobic007G079400 Sobic001G057700--Sobic008G187100 Sobic001G057700--Sobic003G339700 Sobic001G057700--Sobic004G355700 Sobic001G057700--Sobic005G132000
Octagon: transcription factors


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