Gene annotation
Transcriptome id Sobic.003G425300.1
Synonym ATHY2, GUN3, HY2, Sb03g045760
Functional annotation Phycoerythrobilin ferredoxin oxidoreductase (PubMedID : 24906815)
phycoerythrobilin ferredoxin oxidoreductase, putative, expressed
UniProt A0A1W0W1E3
Pfam PF05996
Panther DB PTHR34557 PTHR34557:SF1
NCBI CDD -
KEGG Orthology K08101; phytochromobilin:ferredoxin oxidoreductase
Gene Ontology GO:0016636; oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor GO:0010024phytochromobilin biosynthetic process


Orthologs (automatic annotation)
TAIR AT3G09150 : phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
RAP-DB (Rice) LOC_Os01g72090.1 : phycoerythrobilin ferredoxin oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a039141
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
2 Sobic.002G417300 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
4 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
5 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
6 Sobic.003G277400 violaxanthin de-epoxidase, putative, expressed -
7 Sobic.003G426900 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
8 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
9 Sobic.003G440300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
11 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
12 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
13 Sobic.002G381700 WD-40 repeat family protein, putative, expressed -
14 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
15 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
16 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
17 Sobic.005G062700 nifU, putative, expressed -
18 Sobic.001G057700 heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
19 Sobic.001G104900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@peptidase, M50 family, putative, expressed -
20 Sobic.006G041000 "Oxidoreductase, zinc-binding dehydrogenase family protein"("PubMedID : 26759170,PubMedID : 24597475")@dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic003G425300 Sobic003G425300 Sobic004G323400 Sobic004G323400 Sobic003G425300--Sobic004G323400 Sobic002G417300 Sobic002G417300 Sobic003G425300--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic003G425300--Sobic002G295100 Sobic003G373600 Sobic003G373600 Sobic003G425300--Sobic003G373600 Sobic005G132000 Sobic005G132000 Sobic003G425300--Sobic005G132000 Sobic003G277400 Sobic003G277400 Sobic003G425300--Sobic003G277400 Sobic003G426900 Sobic003G426900 Sobic003G425300--Sobic003G426900 Sobic003G428600 Sobic003G428600 Sobic003G425300--Sobic003G428600 Sobic003G440300 Sobic003G440300 Sobic003G425300--Sobic003G440300 Sobic004G323400--Sobic002G417300 Sobic004G323400--Sobic002G295100 Sobic003G188200 Sobic003G188200 Sobic004G323400--Sobic003G188200 Sobic001G104900 Sobic001G104900 Sobic004G323400--Sobic001G104900 Sobic004G323400--Sobic003G440300 Sobic004G323400--Sobic003G425300 Sobic006G041000 Sobic006G041000 Sobic004G323400--Sobic006G041000 Sobic004G282900 Sobic004G282900 Sobic004G323400--Sobic004G282900 Sobic002G291800 Sobic002G291800 Sobic004G323400--Sobic002G291800 Sobic002G417300--Sobic004G323400 Sobic003G339700 Sobic003G339700 Sobic002G417300--Sobic003G339700 Sobic007G146400 Sobic007G146400 Sobic002G417300--Sobic007G146400 Sobic001G160800 Sobic001G160800 Sobic002G417300--Sobic001G160800 Sobic002G417300--Sobic003G425300 Sobic002G275100 Sobic002G275100 Sobic002G417300--Sobic002G275100 Sobic002G417300--Sobic002G295100 Sobic007G121300 Sobic007G121300 Sobic002G417300--Sobic007G121300 Sobic004G189200 Sobic004G189200 Sobic002G417300--Sobic004G189200 Sobic002G295100--Sobic004G323400 Sobic001G331600 Sobic001G331600 Sobic002G295100--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic002G295100--Sobic001G485100 Sobic002G293500 Sobic002G293500 Sobic002G295100--Sobic002G293500 Sobic004G312600 Sobic004G312600 Sobic002G295100--Sobic004G312600 Sobic001G046000 Sobic001G046000 Sobic002G295100--Sobic001G046000 Sobic009G225600 Sobic009G225600 Sobic002G295100--Sobic009G225600 Sobic006G257800 Sobic006G257800 Sobic002G295100--Sobic006G257800 Sobic003G162400 Sobic003G162400 Sobic002G295100--Sobic003G162400 Sobic003G157900 Sobic003G157900 Sobic003G373600--Sobic003G157900 Sobic005G062700 Sobic005G062700 Sobic003G373600--Sobic005G062700 Sobic003G373600--Sobic003G425300 Sobic003G381700 Sobic003G381700 Sobic003G373600--Sobic003G381700 Sobic005G172400 Sobic005G172400 Sobic003G373600--Sobic005G172400 Sobic001G276300 Sobic001G276300 Sobic003G373600--Sobic001G276300 Sobic007G079400 Sobic007G079400 Sobic003G373600--Sobic007G079400 Sobic008G077500 Sobic008G077500 Sobic003G373600--Sobic008G077500 Sobic008G187100 Sobic008G187100 Sobic003G373600--Sobic008G187100 Sobic003G029500 Sobic003G029500 Sobic005G132000--Sobic003G029500 Sobic005G201000 Sobic005G201000 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic009G040400 Sobic009G040400 Sobic005G132000--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic005G132000--Sobic007G010800 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic003G277400--Sobic007G010800 Sobic003G277400--Sobic009G040400 Sobic004G154700 Sobic004G154700 Sobic003G277400--Sobic004G154700 Sobic002G258400 Sobic002G258400 Sobic003G277400--Sobic002G258400 Sobic004G154800 Sobic004G154800 Sobic003G277400--Sobic004G154800 Sobic001G220000 Sobic001G220000 Sobic003G277400--Sobic001G220000 Sobic003G185600 Sobic003G185600 Sobic003G277400--Sobic003G185600 Sobic006G108200 Sobic006G108200 Sobic003G277400--Sobic006G108200 Sobic002G356900 Sobic002G356900 Sobic003G277400--Sobic002G356900 Sobic003G426900--Sobic003G428600 Sobic002G351200 Sobic002G351200 Sobic003G426900--Sobic002G351200 Sobic002G213400 Sobic002G213400 Sobic003G426900--Sobic002G213400 Sobic001G018000 Sobic001G018000 Sobic003G426900--Sobic001G018000 Sobic003G426900--Sobic007G010800 Sobic010G101000 Sobic010G101000 Sobic003G426900--Sobic010G101000 Sobic001G112900 Sobic001G112900 Sobic003G426900--Sobic001G112900 Sobic010G113200 Sobic010G113200 Sobic003G426900--Sobic010G113200 Sobic003G304300 Sobic003G304300 Sobic003G426900--Sobic003G304300 Sobic003G428600--Sobic003G304300 Sobic003G428600--Sobic010G101000 Sobic003G186800 Sobic003G186800 Sobic003G428600--Sobic003G186800 Sobic010G104700 Sobic010G104700 Sobic003G428600--Sobic010G104700 Sobic003G428600--Sobic002G351200 Sobic003G428600--Sobic009G225600 Sobic003G428600--Sobic001G018000 Sobic003G428600--Sobic001G112900 Sobic004G268400 Sobic004G268400 Sobic003G428600--Sobic004G268400 Sobic004G190100 Sobic004G190100 Sobic003G440300--Sobic004G190100 Sobic003G440300--Sobic003G162400 Sobic003G326000 Sobic003G326000 Sobic003G440300--Sobic003G326000 Sobic003G440300--Sobic003G188200 Sobic003G440300--Sobic002G291800 Sobic003G440300--Sobic001G112900 Sobic005G002400 Sobic005G002400 Sobic003G440300--Sobic005G002400 Sobic006G154800 Sobic006G154800 Sobic003G440300--Sobic006G154800 Sobic003G440300--Sobic004G323400
Octagon: transcription factors


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