Gene annotation
Transcriptome id Sobic.003G426900.2,Sobic.003G426900.1
Synonym Sb03g045890
Functional annotation proline synthetase co-transcribed bacterial homolog protein, putative, expressed
UniProt C5XHW3 , A0A1W0W1G8
Pfam PF01168
Panther DB PTHR10146 PTHR10146:SF7
NCBI CDD KOG3157; Proline synthetase co-transcribed protein
KEGG Orthology K06997; yggS, PLP dependent protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26860 : Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
RAP-DB (Rice) LOC_Os01g72205.1 : proline synthetase co-transcribed bacterial homolog protein, putative, expressed
MaizeGDB (Corn) Zm00025a038068 , Zm00025a025990
Brachypodium -
Barley HORVU3Hr1G107290.6 , HORVU3Hr1G107290.7 , HORVU3Hr1G107290.5 , HORVU3Hr1G107290.2 , HORVU3Hr1G107290.3 , HORVU3Hr1G107290.1 , HORVU3Hr1G107290.4
Wheat TraesCS1D02G099200 , TraesCS1B02G118400 , TraesCS3D02G485100 , TraesCS1A02G090600
Populus -


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cDNA sequences
Sobic.003G426900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
2 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.002G213400 expressed protein -
4 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
5 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
6 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
7 Sobic.001G112900 expressed protein -
8 Sobic.010G113200 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
9 Sobic.003G304300 expressed protein -
10 Sobic.005G002400 expressed protein -
11 Sobic.008G002400 expressed protein -
12 Sobic.010G207100 methyltransferase domain containing protein, putative, expressed -
13 Sobic.009G259100 CCT motif family protein, expressed -
14 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase
15 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.007G016600 expressed protein -
17 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
19 Sobic.001G434000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G426900 Sobic003G426900 Sobic003G428600 Sobic003G428600 Sobic003G426900--Sobic003G428600 Sobic002G351200 Sobic002G351200 Sobic003G426900--Sobic002G351200 Sobic002G213400 Sobic002G213400 Sobic003G426900--Sobic002G213400 Sobic001G018000 Sobic001G018000 Sobic003G426900--Sobic001G018000 Sobic007G010800 Sobic007G010800 Sobic003G426900--Sobic007G010800 Sobic010G101000 Sobic010G101000 Sobic003G426900--Sobic010G101000 Sobic001G112900 Sobic001G112900 Sobic003G426900--Sobic001G112900 Sobic010G113200 Sobic010G113200 Sobic003G426900--Sobic010G113200 Sobic003G304300 Sobic003G304300 Sobic003G426900--Sobic003G304300 Sobic003G428600--Sobic003G304300 Sobic003G428600--Sobic010G101000 Sobic003G186800 Sobic003G186800 Sobic003G428600--Sobic003G186800 Sobic010G104700 Sobic010G104700 Sobic003G428600--Sobic010G104700 Sobic003G428600--Sobic002G351200 Sobic009G225600 Sobic009G225600 Sobic003G428600--Sobic009G225600 Sobic003G428600--Sobic001G018000 Sobic003G428600--Sobic001G112900 Sobic004G268400 Sobic004G268400 Sobic003G428600--Sobic004G268400 Sobic010G100900 Sobic010G100900 Sobic002G351200--Sobic010G100900 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic004G267700 Sobic004G267700 Sobic002G351200--Sobic004G267700 Sobic002G351200--Sobic010G101000 Sobic002G132400 Sobic002G132400 Sobic002G351200--Sobic002G132400 Sobic002G351200--Sobic003G186800 Sobic002G351200--Sobic002G213400 Sobic002G213400--Sobic002G351200 Sobic010G207100 Sobic010G207100 Sobic002G213400--Sobic010G207100 Sobic002G213400--Sobic001G018000 Sobic007G016600 Sobic007G016600 Sobic002G213400--Sobic007G016600 Sobic001G434000 Sobic001G434000 Sobic002G213400--Sobic001G434000 Sobic002G213400--Sobic010G100900 Sobic002G213400--Sobic004G268400 Sobic007G124500 Sobic007G124500 Sobic002G213400--Sobic007G124500 Sobic002G213400--Sobic003G304300 Sobic001G018000--Sobic004G268400 Sobic001G018000--Sobic002G351200 Sobic001G018000--Sobic007G016600 Sobic001G018000--Sobic010G101000 Sobic001G018000--Sobic004G267700 Sobic001G411100 Sobic001G411100 Sobic001G018000--Sobic001G411100 Sobic002G030900 Sobic002G030900 Sobic001G018000--Sobic002G030900 Sobic001G018000--Sobic003G304300 Sobic001G018000--Sobic003G186800 Sobic002G356900 Sobic002G356900 Sobic007G010800--Sobic002G356900 Sobic007G010800--Sobic001G018000 Sobic007G010800--Sobic010G100900 Sobic009G040400 Sobic009G040400 Sobic007G010800--Sobic009G040400 Sobic007G010800--Sobic002G351200 Sobic003G003450 Sobic003G003450 Sobic007G010800--Sobic003G003450 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic007G010800--Sobic003G186800 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300 Sobic003G339200 Sobic003G339200 Sobic001G112900--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic002G161400 Sobic002G161400 Sobic001G112900--Sobic002G161400 Sobic001G112900--Sobic010G113200 Sobic005G002400 Sobic005G002400 Sobic001G112900--Sobic005G002400 Sobic006G191500 Sobic006G191500 Sobic001G112900--Sobic006G191500 Sobic003G162400 Sobic003G162400 Sobic001G112900--Sobic003G162400 Sobic001G112900--Sobic010G104700 Sobic010G113200--Sobic001G112900 Sobic010G113200--Sobic003G339200 Sobic010G113200--Sobic003G304300 Sobic009G246400 Sobic009G246400 Sobic010G113200--Sobic009G246400 Sobic010G113200--Sobic005G002400 Sobic010G113200--Sobic002G161400 Sobic010G113200--Sobic002G351200 Sobic010G113200--Sobic004G344600 Sobic010G113200--Sobic003G162400 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G380200 Sobic003G380200 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400
Octagon: transcription factors


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