Gene annotation
Transcriptome id Sobic.004G125800.2,Sobic.004G125800.1
Synonym VTE1, Sb04g010660, ATSDX1
Functional annotation tocopherol cyclase, chloroplast precursor, putative, expressed
UniProt C5Y019 , A0A1Z5RM39
Pfam PF14249
Panther DB PTHR35309 PTHR35309:SF2
NCBI CDD -
KEGG Orthology K09834; VTE1, tocopherol cyclase
Gene Ontology GO:0009976; tocopherol cyclase activity


Orthologs (automatic annotation)
TAIR AT4G32770 : tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
RAP-DB (Rice) LOC_Os02g17650.1 : tocopherol cyclase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a019791
Brachypodium PNT66331
Barley HORVU1Hr1G060090.2 , HORVU1Hr1G060090.3 , HORVU1Hr1G060090.1 , HORVU1Hr1G060090.4 , HORVU1Hr1G060090.5 , HORVU5Hr1G106680.1
Wheat TraesCS1B02G236600 , TraesCS1B02G236600 , TraesCS1D02G224900 , TraesCS1A02G223300 , TraesCS1A02G223300
Populus -


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cDNA sequences
Sobic.004G125800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
2 Sobic.001G104700 expressed protein -
3 Sobic.002G030900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
5 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
6 Sobic.007G124500 methyltransferase, putative, expressed -
7 Sobic.001G411100 expressed protein -
8 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G046950 - -
11 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
12 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
13 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
14 Sobic.002G213400 expressed protein -
15 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
16 Sobic.002G060800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed -
17 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
18 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
19 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.001G434000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G125800 Sobic004G125800 Sobic001G018000 Sobic001G018000 Sobic004G125800--Sobic001G018000 Sobic001G104700 Sobic001G104700 Sobic004G125800--Sobic001G104700 Sobic002G030900 Sobic002G030900 Sobic004G125800--Sobic002G030900 Sobic010G101000 Sobic010G101000 Sobic004G125800--Sobic010G101000 Sobic009G225600 Sobic009G225600 Sobic004G125800--Sobic009G225600 Sobic007G124500 Sobic007G124500 Sobic004G125800--Sobic007G124500 Sobic001G411100 Sobic001G411100 Sobic004G125800--Sobic001G411100 Sobic002G351200 Sobic002G351200 Sobic004G125800--Sobic002G351200 Sobic001G046000 Sobic001G046000 Sobic004G125800--Sobic001G046000 Sobic004G268400 Sobic004G268400 Sobic001G018000--Sobic004G268400 Sobic001G018000--Sobic002G351200 Sobic007G016600 Sobic007G016600 Sobic001G018000--Sobic007G016600 Sobic001G018000--Sobic010G101000 Sobic004G267700 Sobic004G267700 Sobic001G018000--Sobic004G267700 Sobic001G018000--Sobic001G411100 Sobic001G018000--Sobic002G030900 Sobic003G304300 Sobic003G304300 Sobic001G018000--Sobic003G304300 Sobic003G186800 Sobic003G186800 Sobic001G018000--Sobic003G186800 Sobic001G104700--Sobic001G411100 Sobic001G104700--Sobic002G030900 Sobic001G104600 Sobic001G104600 Sobic001G104700--Sobic001G104600 Sobic003G103300 Sobic003G103300 Sobic001G104700--Sobic003G103300 Sobic001G104700--Sobic001G018000 Sobic001G104700--Sobic010G101000 Sobic001G104700--Sobic004G125800 Sobic001G104700--Sobic004G268400 Sobic001G104700--Sobic004G267700 Sobic002G030900--Sobic010G101000 Sobic002G030900--Sobic001G411100 Sobic002G030900--Sobic001G018000 Sobic002G030900--Sobic004G268400 Sobic002G030900--Sobic001G104700 Sobic002G030900--Sobic004G267700 Sobic002G030900--Sobic003G186800 Sobic002G030900--Sobic007G124500 Sobic008G088821 Sobic008G088821 Sobic002G030900--Sobic008G088821 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G104700 Sobic010G104700 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300 Sobic009G225600--Sobic001G046000 Sobic009G225600--Sobic010G101000 Sobic009G225600--Sobic003G186800 Sobic002G047400 Sobic002G047400 Sobic009G225600--Sobic002G047400 Sobic001G485100 Sobic001G485100 Sobic009G225600--Sobic001G485100 Sobic009G225600--Sobic010G104700 Sobic009G225600--Sobic002G351200 Sobic001G015200 Sobic001G015200 Sobic009G225600--Sobic001G015200 Sobic003G380200 Sobic003G380200 Sobic009G225600--Sobic003G380200 Sobic002G072500 Sobic002G072500 Sobic007G124500--Sobic002G072500 Sobic007G124500--Sobic001G411100 Sobic007G166300 Sobic007G166300 Sobic007G124500--Sobic007G166300 Sobic001G509200 Sobic001G509200 Sobic007G124500--Sobic001G509200 Sobic010G100900 Sobic010G100900 Sobic007G124500--Sobic010G100900 Sobic007G124500--Sobic002G351200 Sobic004G103300 Sobic004G103300 Sobic007G124500--Sobic004G103300 Sobic010G231500 Sobic010G231500 Sobic007G124500--Sobic010G231500 Sobic001G393300 Sobic001G393300 Sobic007G124500--Sobic001G393300 Sobic001G411100--Sobic007G124500 Sobic001G411100--Sobic001G018000 Sobic001G411100--Sobic002G030900 Sobic001G411100--Sobic001G104700 Sobic001G411100--Sobic004G268400 Sobic001G411100--Sobic010G101000 Sobic001G411100--Sobic003G103300 Sobic001G411100--Sobic002G351200 Sobic001G411100--Sobic004G267700 Sobic002G351200--Sobic010G100900 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic002G351200--Sobic010G101000 Sobic002G132400 Sobic002G132400 Sobic002G351200--Sobic002G132400 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic001G046000--Sobic009G225600 Sobic001G046000--Sobic001G485100 Sobic001G046000--Sobic010G104700 Sobic001G046000--Sobic002G047400 Sobic001G046000--Sobic003G186800 Sobic001G046000--Sobic010G101000 Sobic006G090100 Sobic006G090100 Sobic001G046000--Sobic006G090100 Sobic004G153900 Sobic004G153900 Sobic001G046000--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic001G046000--Sobic006G191500
Octagon: transcription factors


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