Gene annotation
Transcriptome id Sobic.001G046000.1
Synonym Sb01g004240
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WW46 , H0I4C8
Pfam PF02341
Panther DB PTHR33791 PTHR33791:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19855 : Chaperonin-like RbcX protein
RAP-DB (Rice) LOC_Os03g59320.1 : expressed protein
MaizeGDB (Corn) Zm00025a016505
Brachypodium KQK12575
Barley HORVU5Hr1G093930.3 , HORVU5Hr1G093930.2 , HORVU5Hr1G093930.1 , HORVU5Hr1G093930.5 , HORVU5Hr1G093930.4 , HORVU5Hr1G004490.1 , HORVU5Hr1G109940.8 , HORVU5Hr1G109940.9 , HORVU5Hr1G109940.2 , HORVU5Hr1G109940.3 , HORVU5Hr1G109940.1 , HORVU5Hr1G109940.6 , HORVU5Hr1G109940.7 , HORVU5Hr1G109940.4 , HORVU5Hr1G109940.5
Wheat TraesCS5B02G468800 , TraesCS5D02G470300 , TraesCS5A02G459200
Populus -


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cDNA sequences
Sobic.001G046000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
2 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
4 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
5 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
6 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
7 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
8 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
9 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
11 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
12 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
14 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
15 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
16 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
17 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
18 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
19 Sobic.002G060800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed -
20 Sobic.003G304300 expressed protein -


Gene co-expression network
sample Sobic001G046000 Sobic001G046000 Sobic009G225600 Sobic009G225600 Sobic001G046000--Sobic009G225600 Sobic001G485100 Sobic001G485100 Sobic001G046000--Sobic001G485100 Sobic010G104700 Sobic010G104700 Sobic001G046000--Sobic010G104700 Sobic002G047400 Sobic002G047400 Sobic001G046000--Sobic002G047400 Sobic003G186800 Sobic003G186800 Sobic001G046000--Sobic003G186800 Sobic010G101000 Sobic010G101000 Sobic001G046000--Sobic010G101000 Sobic006G090100 Sobic006G090100 Sobic001G046000--Sobic006G090100 Sobic004G153900 Sobic004G153900 Sobic001G046000--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic001G046000--Sobic006G191500 Sobic009G225600--Sobic001G046000 Sobic009G225600--Sobic010G101000 Sobic009G225600--Sobic003G186800 Sobic009G225600--Sobic002G047400 Sobic009G225600--Sobic001G485100 Sobic009G225600--Sobic010G104700 Sobic002G351200 Sobic002G351200 Sobic009G225600--Sobic002G351200 Sobic001G015200 Sobic001G015200 Sobic009G225600--Sobic001G015200 Sobic003G380200 Sobic003G380200 Sobic009G225600--Sobic003G380200 Sobic001G485100--Sobic006G191500 Sobic002G161400 Sobic002G161400 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic001G485100--Sobic009G225600 Sobic004G344600 Sobic004G344600 Sobic001G485100--Sobic004G344600 Sobic010G104700--Sobic001G046000 Sobic003G304300 Sobic003G304300 Sobic010G104700--Sobic003G304300 Sobic010G104700--Sobic010G101000 Sobic010G104700--Sobic004G344600 Sobic010G104700--Sobic004G153900 Sobic010G104700--Sobic009G225600 Sobic010G104700--Sobic002G161400 Sobic008G180800 Sobic008G180800 Sobic010G104700--Sobic008G180800 Sobic010G104700--Sobic002G351200 Sobic002G047400--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic002G047400--Sobic008G149100 Sobic002G047400--Sobic003G186800 Sobic002G047400--Sobic001G046000 Sobic002G047400--Sobic003G228300 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic001G509200 Sobic001G509200 Sobic002G047400--Sobic001G509200 Sobic002G047400--Sobic001G485100 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic003G186800--Sobic009G225600 Sobic003G186800--Sobic006G191500 Sobic003G186800--Sobic001G485100 Sobic003G186800--Sobic010G101000 Sobic004G268400 Sobic004G268400 Sobic003G186800--Sobic004G268400 Sobic003G186800--Sobic002G047400 Sobic004G267700 Sobic004G267700 Sobic003G186800--Sobic004G267700 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic002G030900 Sobic002G030900 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic010G101000--Sobic001G018000 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300 Sobic001G207800 Sobic001G207800 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic001G077300 Sobic001G077300 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic009G073900 Sobic009G073900 Sobic006G090100--Sobic009G073900 Sobic002G382700 Sobic002G382700 Sobic006G090100--Sobic002G382700 Sobic003G341300 Sobic003G341300 Sobic006G090100--Sobic003G341300 Sobic006G090100--Sobic001G046000 Sobic002G081400 Sobic002G081400 Sobic006G090100--Sobic002G081400 Sobic004G128900 Sobic004G128900 Sobic004G153900--Sobic004G128900 Sobic004G153900--Sobic002G161400 Sobic004G153900--Sobic010G104700 Sobic004G153900--Sobic001G046000 Sobic004G153900--Sobic001G331600 Sobic004G153900--Sobic006G191500 Sobic004G153900--Sobic001G485100 Sobic004G153900--Sobic008G149100 Sobic004G153900--Sobic004G344600 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic006G191500--Sobic001G046000
Octagon: transcription factors


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