Gene annotation
Transcriptome id Sobic.003G373600.1
Synonym SHM7, Sb03g041410
Functional annotation - (PubMedID : 26976818)
serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
UniProt C5XRB9
Pfam PF00464
Panther DB PTHR11680 PTHR11680:SF7
NCBI CDD -
KEGG Orthology K00600; glyA, glycine hydroxymethyltransferase
Gene Ontology GO:0016740; transferase activity


Orthologs (automatic annotation)
TAIR AT1G36370 : serine hydroxymethyltransferase 7
RAP-DB (Rice) LOC_Os01g65410.1 : serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a004399 , Zm00025a039535 , Zm00025a029775 , Zm00025a026622
Brachypodium KQK10844 , KQK10845 , KQJ88548
Barley HORVU3Hr1G082070.5 , HORVU3Hr1G082070.2 , HORVU3Hr1G082070.3 , HORVU3Hr1G082070.1
Wheat TraesCS3A02G385600 , TraesCS3B02G417800 , TraesCS3D02G378700
Populus -


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cDNA sequences
Sobic.003G373600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G157900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycine-rich protein, putative, expressed -
2 Sobic.005G062700 nifU, putative, expressed -
3 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
4 Sobic.003G381700 DUF647 domain containing protein, putative, expressed -
5 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
6 Sobic.001G276300 peptide transporter PTR2, putative, expressed -
7 Sobic.007G079400 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
8 Sobic.008G077500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
9 Sobic.008G187100 early-responsive to dehydration protein-related, putative, expressed -
10 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
11 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
12 Sobic.001G412800 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
14 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
15 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
16 Sobic.004G269800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
17 Sobic.009G259100 CCT motif family protein, expressed -
18 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
19 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
20 Sobic.009G162600 OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein


Gene co-expression network
sample Sobic003G373600 Sobic003G373600 Sobic003G157900 Sobic003G157900 Sobic003G373600--Sobic003G157900 Sobic005G062700 Sobic005G062700 Sobic003G373600--Sobic005G062700 Sobic003G425300 Sobic003G425300 Sobic003G373600--Sobic003G425300 Sobic003G381700 Sobic003G381700 Sobic003G373600--Sobic003G381700 Sobic005G172400 Sobic005G172400 Sobic003G373600--Sobic005G172400 Sobic001G276300 Sobic001G276300 Sobic003G373600--Sobic001G276300 Sobic007G079400 Sobic007G079400 Sobic003G373600--Sobic007G079400 Sobic008G077500 Sobic008G077500 Sobic003G373600--Sobic008G077500 Sobic008G187100 Sobic008G187100 Sobic003G373600--Sobic008G187100 Sobic007G090900 Sobic007G090900 Sobic003G157900--Sobic007G090900 Sobic006G212800 Sobic006G212800 Sobic003G157900--Sobic006G212800 Sobic003G380200 Sobic003G380200 Sobic003G157900--Sobic003G380200 Sobic009G103000 Sobic009G103000 Sobic003G157900--Sobic009G103000 Sobic002G136100 Sobic002G136100 Sobic003G157900--Sobic002G136100 Sobic002G275100 Sobic002G275100 Sobic003G157900--Sobic002G275100 Sobic004G267700 Sobic004G267700 Sobic003G157900--Sobic004G267700 Sobic002G162400 Sobic002G162400 Sobic003G157900--Sobic002G162400 Sobic006G213700 Sobic006G213700 Sobic003G157900--Sobic006G213700 Sobic009G225600 Sobic009G225600 Sobic005G062700--Sobic009G225600 Sobic001G015200 Sobic001G015200 Sobic005G062700--Sobic001G015200 Sobic002G047400 Sobic002G047400 Sobic005G062700--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic005G062700--Sobic001G303200 Sobic006G221000 Sobic006G221000 Sobic005G062700--Sobic006G221000 Sobic001G509200 Sobic001G509200 Sobic005G062700--Sobic001G509200 Sobic005G062700--Sobic005G172400 Sobic007G108900 Sobic007G108900 Sobic005G062700--Sobic007G108900 Sobic004G305900 Sobic004G305900 Sobic005G062700--Sobic004G305900 Sobic004G323400 Sobic004G323400 Sobic003G425300--Sobic004G323400 Sobic002G417300 Sobic002G417300 Sobic003G425300--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic003G425300--Sobic002G295100 Sobic003G425300--Sobic003G373600 Sobic005G132000 Sobic005G132000 Sobic003G425300--Sobic005G132000 Sobic003G277400 Sobic003G277400 Sobic003G425300--Sobic003G277400 Sobic003G426900 Sobic003G426900 Sobic003G425300--Sobic003G426900 Sobic003G428600 Sobic003G428600 Sobic003G425300--Sobic003G428600 Sobic003G440300 Sobic003G440300 Sobic003G425300--Sobic003G440300 Sobic003G381700--Sobic008G187100 Sobic001G057700 Sobic001G057700 Sobic003G381700--Sobic001G057700 Sobic003G339700 Sobic003G339700 Sobic003G381700--Sobic003G339700 Sobic003G264800 Sobic003G264800 Sobic003G381700--Sobic003G264800 Sobic003G381700--Sobic003G373600 Sobic007G146400 Sobic007G146400 Sobic003G381700--Sobic007G146400 Sobic003G381700--Sobic001G276300 Sobic001G333500 Sobic001G333500 Sobic003G381700--Sobic001G333500 Sobic005G106600 Sobic005G106600 Sobic003G381700--Sobic005G106600 Sobic001G104600 Sobic001G104600 Sobic005G172400--Sobic001G104600 Sobic005G172400--Sobic001G015200 Sobic003G103300 Sobic003G103300 Sobic005G172400--Sobic003G103300 Sobic005G172400--Sobic005G062700 Sobic010G101000 Sobic010G101000 Sobic005G172400--Sobic010G101000 Sobic005G172400--Sobic004G305900 Sobic001G289500 Sobic001G289500 Sobic005G172400--Sobic001G289500 Sobic001G317800 Sobic001G317800 Sobic005G172400--Sobic001G317800 Sobic005G172400--Sobic002G047400 Sobic007G135800 Sobic007G135800 Sobic001G276300--Sobic007G135800 Sobic001G276300--Sobic001G509200 Sobic005G028800 Sobic005G028800 Sobic001G276300--Sobic005G028800 Sobic001G276300--Sobic006G213700 Sobic001G276300--Sobic003G380200 Sobic006G226601 Sobic006G226601 Sobic001G276300--Sobic006G226601 Sobic010G231500 Sobic010G231500 Sobic001G276300--Sobic010G231500 Sobic007G169100 Sobic007G169100 Sobic001G276300--Sobic007G169100 Sobic002G225100 Sobic002G225100 Sobic001G276300--Sobic002G225100 Sobic007G108400 Sobic007G108400 Sobic007G079400--Sobic007G108400 Sobic003G105900 Sobic003G105900 Sobic007G079400--Sobic003G105900 Sobic007G079400--Sobic001G057700 Sobic007G079400--Sobic003G264800 Sobic002G401000 Sobic002G401000 Sobic007G079400--Sobic002G401000 Sobic007G079400--Sobic003G373600 Sobic002G393700 Sobic002G393700 Sobic007G079400--Sobic002G393700 Sobic007G079400--Sobic005G062700 Sobic004G344000 Sobic004G344000 Sobic007G079400--Sobic004G344000 Sobic008G077500--Sobic007G090900 Sobic004G268300 Sobic004G268300 Sobic008G077500--Sobic004G268300 Sobic001G243200 Sobic001G243200 Sobic008G077500--Sobic001G243200 Sobic008G052900 Sobic008G052900 Sobic008G077500--Sobic008G052900 Sobic008G077500--Sobic009G103000 Sobic008G077500--Sobic006G212800 Sobic008G077500--Sobic003G157900 Sobic003G260100 Sobic003G260100 Sobic008G077500--Sobic003G260100 Sobic008G077500--Sobic002G162400 Sobic008G187100--Sobic003G381700 Sobic003G186900 Sobic003G186900 Sobic008G187100--Sobic003G186900 Sobic008G187100--Sobic003G339700 Sobic008G187100--Sobic005G106600 Sobic008G187100--Sobic001G057700 Sobic001G352400 Sobic001G352400 Sobic008G187100--Sobic001G352400 Sobic003G166200 Sobic003G166200 Sobic008G187100--Sobic003G166200 Sobic004G322700 Sobic004G322700 Sobic008G187100--Sobic004G322700 Sobic008G187100--Sobic007G146400
Octagon: transcription factors


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