Gene annotation
Transcriptome id Sobic.004G269800.1
Synonym G-TMT, Sb04g030760, VTE4, TMT1
Functional annotation Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
UniProt A0A194YRW3
Pfam PF08241
Panther DB PTHR10108 PTHR10108:SF708
NCBI CDD KOG1269; SAM-dependent methyltransferases
KEGG Orthology K05928; tocopherol O-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G64970 : gamma-tocopherol methyltransferase
RAP-DB (Rice) LOC_Os02g47310.1 : Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
MaizeGDB (Corn) Zm00025a021689
Brachypodium KQK00902
Barley HORVU6Hr1G068410.1
Wheat TraesCS6D02G245200 , TraesCS6A02G269700 , TraesCS6B02G297000 , TraesCS6B02G297000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
2 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
3 Sobic.001G276300 peptide transporter PTR2, putative, expressed -
4 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
5 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
6 Sobic.009G132000 expressed protein -
7 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
8 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
9 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
10 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
11 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
12 Sobic.007G169100 glutathione S-transferase, N-terminal domain containing protein, expressed -
13 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
14 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
15 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
16 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
17 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
18 Sobic.003G157900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycine-rich protein, putative, expressed -
19 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
20 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase


Gene co-expression network
sample Sobic004G269800 Sobic004G269800 Sobic005G028800 Sobic005G028800 Sobic004G269800--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic004G269800--Sobic007G166300 Sobic001G276300 Sobic001G276300 Sobic004G269800--Sobic001G276300 Sobic006G063900 Sobic006G063900 Sobic004G269800--Sobic006G063900 Sobic001G509200 Sobic001G509200 Sobic004G269800--Sobic001G509200 Sobic009G132000 Sobic009G132000 Sobic004G269800--Sobic009G132000 Sobic006G213700 Sobic006G213700 Sobic004G269800--Sobic006G213700 Sobic009G170200 Sobic009G170200 Sobic004G269800--Sobic009G170200 Sobic004G103300 Sobic004G103300 Sobic004G269800--Sobic004G103300 Sobic005G028800--Sobic007G166300 Sobic005G028800--Sobic004G103300 Sobic005G028800--Sobic001G509200 Sobic004G124400 Sobic004G124400 Sobic005G028800--Sobic004G124400 Sobic001G015200 Sobic001G015200 Sobic005G028800--Sobic001G015200 Sobic007G135800 Sobic007G135800 Sobic005G028800--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic005G028800--Sobic010G231500 Sobic001G393300 Sobic001G393300 Sobic005G028800--Sobic001G393300 Sobic007G124500 Sobic007G124500 Sobic005G028800--Sobic007G124500 Sobic007G166300--Sobic005G028800 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic007G166300--Sobic001G015200 Sobic007G166300--Sobic007G124500 Sobic007G166300--Sobic007G135800 Sobic007G108900 Sobic007G108900 Sobic007G166300--Sobic007G108900 Sobic002G298800 Sobic002G298800 Sobic007G166300--Sobic002G298800 Sobic001G276300--Sobic007G135800 Sobic001G276300--Sobic001G509200 Sobic001G276300--Sobic005G028800 Sobic001G276300--Sobic006G213700 Sobic003G380200 Sobic003G380200 Sobic001G276300--Sobic003G380200 Sobic006G226601 Sobic006G226601 Sobic001G276300--Sobic006G226601 Sobic001G276300--Sobic010G231500 Sobic007G169100 Sobic007G169100 Sobic001G276300--Sobic007G169100 Sobic002G225100 Sobic002G225100 Sobic001G276300--Sobic002G225100 Sobic006G063900--Sobic004G124400 Sobic001G167900 Sobic001G167900 Sobic006G063900--Sobic001G167900 Sobic006G063900--Sobic005G028800 Sobic004G028300 Sobic004G028300 Sobic006G063900--Sobic004G028300 Sobic006G063900--Sobic007G166300 Sobic006G235350 Sobic006G235350 Sobic006G063900--Sobic006G235350 Sobic006G140500 Sobic006G140500 Sobic006G063900--Sobic006G140500 Sobic006G063900--Sobic001G015200 Sobic006G063900--Sobic007G169100 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic003G094100 Sobic003G094100 Sobic001G509200--Sobic003G094100 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic003G005000 Sobic003G005000 Sobic009G132000--Sobic003G005000 Sobic009G132000--Sobic007G166300 Sobic004G353100 Sobic004G353100 Sobic009G132000--Sobic004G353100 Sobic009G132000--Sobic003G094100 Sobic009G132000--Sobic007G108900 Sobic009G132000--Sobic004G103300 Sobic009G132000--Sobic001G509200 Sobic009G132000--Sobic009G170200 Sobic007G157300 Sobic007G157300 Sobic009G132000--Sobic007G157300 Sobic006G213700--Sobic001G509200 Sobic006G213700--Sobic007G135800 Sobic006G213700--Sobic003G380200 Sobic003G003450 Sobic003G003450 Sobic006G213700--Sobic003G003450 Sobic006G213700--Sobic009G073900 Sobic001G499100 Sobic001G499100 Sobic006G213700--Sobic001G499100 Sobic006G213700--Sobic003G094100 Sobic003G409700 Sobic003G409700 Sobic006G213700--Sobic003G409700 Sobic006G213700--Sobic006G090100 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic006G232600 Sobic006G232600 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic001G077300 Sobic001G077300 Sobic009G170200--Sobic001G077300 Sobic009G170200--Sobic004G353100 Sobic001G378100 Sobic001G378100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic004G103300--Sobic001G509200 Sobic004G103300--Sobic007G166300 Sobic004G103300--Sobic001G393300 Sobic001G368600 Sobic001G368600 Sobic004G103300--Sobic001G368600 Sobic004G103300--Sobic002G298800 Sobic004G103300--Sobic007G108900 Sobic006G097500 Sobic006G097500 Sobic004G103300--Sobic006G097500 Sobic004G103300--Sobic005G028800 Sobic004G103300--Sobic007G135800
Octagon: transcription factors


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