Gene annotation
Transcriptome id Sobic.001G276300.1,Sobic.001G276300.3,Sobic.001G276300.2
Synonym
Functional annotation peptide transporter PTR2, putative, expressed
UniProt A0A1B6QLI3
Pfam PF00854
Panther DB PTHR11654 PTHR11654:SF152
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G62200 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os10g22560.2 : peptide transporter PTR2, putative, expressed
MaizeGDB (Corn) Zm00025a003673
Brachypodium KQK15148 , KQJ98771 , KQJ98773 , KQJ98772
Barley HORVU2Hr1G001320.8 , HORVU2Hr1G001320.9 , HORVU2Hr1G001320.6 , HORVU2Hr1G001320.5 , HORVU2Hr1G001320.7 , HORVU2Hr1G001320.4 , HORVU2Hr1G001320.3 , HORVU4Hr1G004040.2 , HORVU4Hr1G004040.3 , HORVU4Hr1G004040.1 , HORVU4Hr1G004040.4 , HORVU2Hr1G001380.1
Wheat TraesCS7D02G378300 , TraesCS6D02G132100 , TraesCS4A02G287300 , TraesCS7A02G381500 , TraesCS7D02G377800 , TraesCS6D02G353500 , TraesCS7B02G283400 , TraesCS7A02G413300 , TraesCS6B02G171000 , TraesCS6B02G406100 , TraesCS4B02G026700 , TraesCS7B02G284300 , TraesCS7A02G381600 , TraesCS7A02G381800 , TraesCS6A02G142600 , TraesCS6A02G369900 , TraesCS7B02G284300 , TraesCS4D02G024400 , TraesCSU02G207500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
2 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
3 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
4 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
5 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
6 Sobic.006G226601 - -
7 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
8 Sobic.007G169100 glutathione S-transferase, N-terminal domain containing protein, expressed -
9 Sobic.002G225100 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
10 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
12 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
13 Sobic.003G328100 expressed protein -
14 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
15 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
16 Sobic.007G087100 pentatricopeptide, putative, expressed -
17 Sobic.001G317800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
19 Sobic.006G212800 expressed protein -
20 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G276300 Sobic001G276300 Sobic007G135800 Sobic007G135800 Sobic001G276300--Sobic007G135800 Sobic001G509200 Sobic001G509200 Sobic001G276300--Sobic001G509200 Sobic005G028800 Sobic005G028800 Sobic001G276300--Sobic005G028800 Sobic006G213700 Sobic006G213700 Sobic001G276300--Sobic006G213700 Sobic003G380200 Sobic003G380200 Sobic001G276300--Sobic003G380200 Sobic006G226601 Sobic006G226601 Sobic001G276300--Sobic006G226601 Sobic010G231500 Sobic010G231500 Sobic001G276300--Sobic010G231500 Sobic007G169100 Sobic007G169100 Sobic001G276300--Sobic007G169100 Sobic002G225100 Sobic002G225100 Sobic001G276300--Sobic002G225100 Sobic007G135800--Sobic001G509200 Sobic003G094100 Sobic003G094100 Sobic007G135800--Sobic003G094100 Sobic001G393300 Sobic001G393300 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic004G103300 Sobic004G103300 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G166300 Sobic007G166300 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic007G108900 Sobic007G108900 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic005G028800--Sobic007G166300 Sobic005G028800--Sobic004G103300 Sobic005G028800--Sobic001G509200 Sobic004G124400 Sobic004G124400 Sobic005G028800--Sobic004G124400 Sobic001G015200 Sobic001G015200 Sobic005G028800--Sobic001G015200 Sobic005G028800--Sobic007G135800 Sobic005G028800--Sobic010G231500 Sobic005G028800--Sobic001G393300 Sobic007G124500 Sobic007G124500 Sobic005G028800--Sobic007G124500 Sobic006G213700--Sobic001G509200 Sobic006G213700--Sobic007G135800 Sobic006G213700--Sobic003G380200 Sobic003G003450 Sobic003G003450 Sobic006G213700--Sobic003G003450 Sobic006G213700--Sobic009G073900 Sobic001G499100 Sobic001G499100 Sobic006G213700--Sobic001G499100 Sobic006G213700--Sobic003G094100 Sobic006G213700--Sobic003G409700 Sobic006G213700--Sobic006G090100 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic003G380200--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic003G380200--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic003G380200--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic006G226601--Sobic001G276300 Sobic003G328100 Sobic003G328100 Sobic006G226601--Sobic003G328100 Sobic006G226601--Sobic007G169100 Sobic004G006400 Sobic004G006400 Sobic006G226601--Sobic004G006400 Sobic006G226601--Sobic010G231500 Sobic006G097500 Sobic006G097500 Sobic006G226601--Sobic006G097500 Sobic002G005600 Sobic002G005600 Sobic006G226601--Sobic002G005600 Sobic007G058001 Sobic007G058001 Sobic006G226601--Sobic007G058001 Sobic009G207900 Sobic009G207900 Sobic006G226601--Sobic009G207900 Sobic009G004100 Sobic009G004100 Sobic010G231500--Sobic009G004100 Sobic010G231500--Sobic006G097500 Sobic004G300100 Sobic004G300100 Sobic010G231500--Sobic004G300100 Sobic010G231500--Sobic004G103300 Sobic010G231500--Sobic007G124500 Sobic010G231500--Sobic005G028800 Sobic010G231500--Sobic004G124400 Sobic001G368600 Sobic001G368600 Sobic010G231500--Sobic001G368600 Sobic002G356900 Sobic002G356900 Sobic010G231500--Sobic002G356900 Sobic007G169100--Sobic003G328100 Sobic002G061900 Sobic002G061900 Sobic007G169100--Sobic002G061900 Sobic007G169100--Sobic006G097500 Sobic006G265900 Sobic006G265900 Sobic007G169100--Sobic006G265900 Sobic007G169100--Sobic010G231500 Sobic006G140700 Sobic006G140700 Sobic007G169100--Sobic006G140700 Sobic006G063900 Sobic006G063900 Sobic007G169100--Sobic006G063900 Sobic007G169100--Sobic005G028800 Sobic006G155500 Sobic006G155500 Sobic007G169100--Sobic006G155500 Sobic006G212800 Sobic006G212800 Sobic002G225100--Sobic006G212800 Sobic004G207400 Sobic004G207400 Sobic002G225100--Sobic004G207400 Sobic002G225100--Sobic009G207900 Sobic009G170200 Sobic009G170200 Sobic002G225100--Sobic009G170200 Sobic002G225100--Sobic001G276300 Sobic001G411400 Sobic001G411400 Sobic002G225100--Sobic001G411400 Sobic002G225100--Sobic007G135800 Sobic006G232600 Sobic006G232600 Sobic002G225100--Sobic006G232600 Sobic007G107700 Sobic007G107700 Sobic002G225100--Sobic007G107700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.