Gene annotation
Transcriptome id Sobic.002G225100.1
Synonym Sb02g026570, DPBF5, ABF3
Functional annotation bZIP transcription factor, putative, expressed
UniProt A0A109NDJ7 , C5X2A7
Pfam PF00170
Panther DB PTHR22952 PTHR22952:SF190
NCBI CDD -
KEGG Orthology K14432; ABA responsive element binding factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G19290 : ABRE binding factor 4
RAP-DB (Rice) LOC_Os09g28310.1 : bZIP transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a042514 , Zm00025a047246 , Zm00025a049583 , Zm00025a030641 , Zm00025a014057 , Zm00025a005419
Brachypodium KQJ90509
Barley HORVU5Hr1G068230.8 , HORVU7Hr1G035500.4 , HORVU7Hr1G035500.6 , HORVU7Hr1G035500.7 , HORVU7Hr1G035500.2 , HORVU7Hr1G035500.8 , HORVU5Hr1G068230.9 , HORVU5Hr1G068230.6 , HORVU5Hr1G068230.7 , HORVU5Hr1G068230.4 , HORVU5Hr1G068230.5 , HORVU5Hr1G068230.2 , HORVU5Hr1G068230.3 , HORVU5Hr1G068230.1 , HORVU7Hr1G035500.10 , HORVU7Hr1G035500.11
Wheat TraesCS5B02G235600 , TraesCS5A02G237200 , TraesCS5A02G237200 , TraesCS7B02G075600 , TraesCS5D02G244500 , TraesCS5D02G244500 , TraesCS5B02G235600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G212800 expressed protein -
2 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
3 Sobic.009G207900 expressed protein -
4 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
5 Sobic.001G276300 peptide transporter PTR2, putative, expressed -
6 Sobic.001G411400 response regulator receiver domain containing protein, expressed K12129: pseudo-response regulator 7
7 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
8 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
9 Sobic.007G107700 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
10 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
11 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
12 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
13 Sobic.007G087100 pentatricopeptide, putative, expressed -
14 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
15 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
16 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
17 Sobic.001G540600 expressed protein -
18 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
19 Sobic.003G203300 stress regulated protein, putative, expressed -
20 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase


Gene co-expression network
sample Sobic002G225100 Sobic002G225100 Sobic006G212800 Sobic006G212800 Sobic002G225100--Sobic006G212800 Sobic004G207400 Sobic004G207400 Sobic002G225100--Sobic004G207400 Sobic009G207900 Sobic009G207900 Sobic002G225100--Sobic009G207900 Sobic009G170200 Sobic009G170200 Sobic002G225100--Sobic009G170200 Sobic001G276300 Sobic001G276300 Sobic002G225100--Sobic001G276300 Sobic001G411400 Sobic001G411400 Sobic002G225100--Sobic001G411400 Sobic007G135800 Sobic007G135800 Sobic002G225100--Sobic007G135800 Sobic006G232600 Sobic006G232600 Sobic002G225100--Sobic006G232600 Sobic007G107700 Sobic007G107700 Sobic002G225100--Sobic007G107700 Sobic006G212800--Sobic009G207900 Sobic001G077300 Sobic001G077300 Sobic006G212800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic006G212800--Sobic001G180200 Sobic006G212800--Sobic007G135800 Sobic002G206300 Sobic002G206300 Sobic006G212800--Sobic002G206300 Sobic009G073900 Sobic009G073900 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic002G162400 Sobic002G162400 Sobic006G212800--Sobic002G162400 Sobic002G072400 Sobic002G072400 Sobic004G207400--Sobic002G072400 Sobic004G207400--Sobic006G232600 Sobic004G238200 Sobic004G238200 Sobic004G207400--Sobic004G238200 Sobic004G207400--Sobic009G170200 Sobic003G203300 Sobic003G203300 Sobic004G207400--Sobic003G203300 Sobic004G207400--Sobic002G225100 Sobic004G300100 Sobic004G300100 Sobic004G207400--Sobic004G300100 Sobic004G281900 Sobic004G281900 Sobic004G207400--Sobic004G281900 Sobic007G166200 Sobic007G166200 Sobic004G207400--Sobic007G166200 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic009G207900--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic009G207900--Sobic001G504400 Sobic009G219100 Sobic009G219100 Sobic009G207900--Sobic009G219100 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G062400 Sobic009G062400 Sobic009G207900--Sobic009G062400 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic001G378100 Sobic001G378100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic001G276300--Sobic007G135800 Sobic001G509200 Sobic001G509200 Sobic001G276300--Sobic001G509200 Sobic005G028800 Sobic005G028800 Sobic001G276300--Sobic005G028800 Sobic006G213700 Sobic006G213700 Sobic001G276300--Sobic006G213700 Sobic003G380200 Sobic003G380200 Sobic001G276300--Sobic003G380200 Sobic006G226601 Sobic006G226601 Sobic001G276300--Sobic006G226601 Sobic010G231500 Sobic010G231500 Sobic001G276300--Sobic010G231500 Sobic007G169100 Sobic007G169100 Sobic001G276300--Sobic007G169100 Sobic001G276300--Sobic002G225100 Sobic001G411400--Sobic002G225100 Sobic002G198300 Sobic002G198300 Sobic001G411400--Sobic002G198300 Sobic001G411400--Sobic001G276300 Sobic003G327000 Sobic003G327000 Sobic001G411400--Sobic003G327000 Sobic001G411400--Sobic004G207400 Sobic001G436400 Sobic001G436400 Sobic001G411400--Sobic001G436400 Sobic001G411400--Sobic009G207900 Sobic001G368600 Sobic001G368600 Sobic001G411400--Sobic001G368600 Sobic002G298800 Sobic002G298800 Sobic001G411400--Sobic002G298800 Sobic007G135800--Sobic001G509200 Sobic003G094100 Sobic003G094100 Sobic007G135800--Sobic003G094100 Sobic001G393300 Sobic001G393300 Sobic007G135800--Sobic001G393300 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G166300 Sobic007G166300 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic006G232600--Sobic009G170200 Sobic006G232600--Sobic007G087100 Sobic003G003450 Sobic003G003450 Sobic006G232600--Sobic003G003450 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic009G103000 Sobic009G103000 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic002G081400 Sobic002G081400 Sobic006G232600--Sobic002G081400 Sobic003G328100 Sobic003G328100 Sobic007G107700--Sobic003G328100 Sobic007G107700--Sobic003G070900 Sobic003G203000 Sobic003G203000 Sobic007G107700--Sobic003G203000 Sobic007G107700--Sobic009G170200 Sobic007G107700--Sobic005G028800 Sobic001G118400 Sobic001G118400 Sobic007G107700--Sobic001G118400 Sobic007G107700--Sobic007G135800 Sobic007G107700--Sobic010G231500 Sobic007G107700--Sobic001G368600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.