Gene annotation
Transcriptome id Sobic.002G279700.1
Synonym Sb02g031240
Functional annotation 3-dehydroquinate synthase, putative, expressed
UniProt C5X6V7
Pfam PF13685
Panther DB PTHR21090 PTHR21090:SF13
NCBI CDD -
KEGG Orthology K01735; 3-dehydroquinate synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66120 : 3-dehydroquinate synthase, putative
RAP-DB (Rice) LOC_Os09g36800.1 : 3-dehydroquinate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a014461 , Zm00025a049324
Brachypodium KQJ91242 , KQJ91241
Barley HORVU5Hr1G084070.2 , HORVU5Hr1G084070.3 , HORVU5Hr1G084070.1
Wheat TraesCS5D02G336400 , TraesCS5B02G331100 , TraesCS5A02G330700
Populus -


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cDNA sequences
Sobic.002G279700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G128900 thioesterase family protein, putative, expressed -
2 Sobic.006G261700 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
3 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
4 Sobic.002G200900 alpha/beta hydrolase fold, putative, expressed -
5 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
6 Sobic.008G188600 glyoxalase family protein, putative, expressed -
7 Sobic.001G020100 expressed protein -
8 Sobic.008G006200 macrophage migration inhibitory factor, putative, expressed -
9 Sobic.004G307400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
10 Sobic.K031800 inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
11 Sobic.001G291900 expressed protein -
12 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
13 Sobic.005G149400 maf, putative, expressed K06287: septum formation protein
14 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
15 Sobic.010G156000 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.006G132000 glycine-rich protein, putative, expressed -
17 Sobic.010G140600 bolA, putative, expressed -
18 Sobic.004G303200 cytochrome b561, putative, expressed K08360: cytochrome b-561
19 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
20 Sobic.002G351600 prenyltransferase, putative, expressed K12501: homogentisate solanesyltransferase


Gene co-expression network
sample Sobic002G279700 Sobic002G279700 Sobic002G128900 Sobic002G128900 Sobic002G279700--Sobic002G128900 Sobic006G261700 Sobic006G261700 Sobic002G279700--Sobic006G261700 Sobic001G295300 Sobic001G295300 Sobic002G279700--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G279700--Sobic002G200900 Sobic002G233700 Sobic002G233700 Sobic002G279700--Sobic002G233700 Sobic008G188600 Sobic008G188600 Sobic002G279700--Sobic008G188600 Sobic001G020100 Sobic001G020100 Sobic002G279700--Sobic001G020100 Sobic008G006200 Sobic008G006200 Sobic002G279700--Sobic008G006200 Sobic004G307400 Sobic004G307400 Sobic002G279700--Sobic004G307400 Sobic010G140600 Sobic010G140600 Sobic002G128900--Sobic010G140600 Sobic002G128900--Sobic002G279700 Sobic002G128900--Sobic001G295300 Sobic002G128900--Sobic002G200900 Sobic004G281900 Sobic004G281900 Sobic002G128900--Sobic004G281900 Sobic002G072400 Sobic002G072400 Sobic002G128900--Sobic002G072400 Sobic008G096800 Sobic008G096800 Sobic002G128900--Sobic008G096800 Sobic010G269400 Sobic010G269400 Sobic002G128900--Sobic010G269400 Sobic008G144800 Sobic008G144800 Sobic002G128900--Sobic008G144800 Sobic006G261700--Sobic002G279700 Sobic009G140300 Sobic009G140300 Sobic006G261700--Sobic009G140300 Sobic008G171300 Sobic008G171300 Sobic006G261700--Sobic008G171300 Sobic006G261700--Sobic001G020100 Sobic006G261700--Sobic004G307400 SobicK031800 SobicK031800 Sobic006G261700--SobicK031800 Sobic004G343900 Sobic004G343900 Sobic006G261700--Sobic004G343900 Sobic006G261700--Sobic008G188600 Sobic001G254600 Sobic001G254600 Sobic006G261700--Sobic001G254600 Sobic001G291900 Sobic001G291900 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic007G208300 Sobic007G208300 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G104800 Sobic001G104800 Sobic001G295300--Sobic001G104800 Sobic006G108200 Sobic006G108200 Sobic002G200900--Sobic006G108200 Sobic002G200900--Sobic004G281900 Sobic002G351600 Sobic002G351600 Sobic002G200900--Sobic002G351600 Sobic001G220000 Sobic001G220000 Sobic002G200900--Sobic001G220000 Sobic004G055000 Sobic004G055000 Sobic002G200900--Sobic004G055000 Sobic003G275200 Sobic003G275200 Sobic002G200900--Sobic003G275200 Sobic006G155500 Sobic006G155500 Sobic002G200900--Sobic006G155500 Sobic006G050400 Sobic006G050400 Sobic002G200900--Sobic006G050400 Sobic002G159100 Sobic002G159100 Sobic002G200900--Sobic002G159100 Sobic002G233700--Sobic008G171300 Sobic004G012900 Sobic004G012900 Sobic002G233700--Sobic004G012900 Sobic004G303200 Sobic004G303200 Sobic002G233700--Sobic004G303200 Sobic007G052400 Sobic007G052400 Sobic002G233700--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic002G233700--Sobic007G225500 Sobic001G005200 Sobic001G005200 Sobic002G233700--Sobic001G005200 Sobic003G002300 Sobic003G002300 Sobic002G233700--Sobic003G002300 Sobic002G401800 Sobic002G401800 Sobic002G233700--Sobic002G401800 Sobic003G378600 Sobic003G378600 Sobic002G233700--Sobic003G378600 Sobic003G387100 Sobic003G387100 Sobic008G188600--Sobic003G387100 Sobic009G043000 Sobic009G043000 Sobic008G188600--Sobic009G043000 Sobic008G102000 Sobic008G102000 Sobic008G188600--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic008G188600--Sobic006G207800 Sobic009G059300 Sobic009G059300 Sobic008G188600--Sobic009G059300 Sobic006G067400 Sobic006G067400 Sobic008G188600--Sobic006G067400 Sobic010G201700 Sobic010G201700 Sobic008G188600--Sobic010G201700 Sobic010G153900 Sobic010G153900 Sobic008G188600--Sobic010G153900 Sobic008G188600--Sobic007G225500 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G289500 Sobic001G289500 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic005G073200 Sobic005G073200 Sobic008G006200--Sobic005G073200 Sobic008G006200--Sobic002G279700 Sobic008G006200--SobicK031800 Sobic003G219200 Sobic003G219200 Sobic008G006200--Sobic003G219200 Sobic002G275300 Sobic002G275300 Sobic008G006200--Sobic002G275300 Sobic004G268000 Sobic004G268000 Sobic008G006200--Sobic004G268000 Sobic009G129300 Sobic009G129300 Sobic008G006200--Sobic009G129300 Sobic008G006200--Sobic009G140300 Sobic010G181300 Sobic010G181300 Sobic008G006200--Sobic010G181300 Sobic005G149400 Sobic005G149400 Sobic004G307400--Sobic005G149400 Sobic004G307400--Sobic004G343900 Sobic009G030800 Sobic009G030800 Sobic004G307400--Sobic009G030800 Sobic004G307400--Sobic003G387100 Sobic004G307400--Sobic001G291900 Sobic004G307400--SobicK031800 Sobic004G016400 Sobic004G016400 Sobic004G307400--Sobic004G016400 Sobic004G336000 Sobic004G336000 Sobic004G307400--Sobic004G336000 Sobic009G030900 Sobic009G030900 Sobic004G307400--Sobic009G030900
Octagon: transcription factors


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