Gene annotation
Transcriptome id Sobic.001G295300.1
Synonym Sb01g028840, PMSR4
Functional annotation peptide methionine sulfoxide reductase, putative, expressed
UniProt C5WRH6
Pfam PF01625
Panther DB PTHR10173 PTHR10173:SF23
NCBI CDD KOG1635; Peptide methionine sulfoxide reductase
KEGG Orthology K07304; peptide-methionine (S)-S-oxide reductase
Gene Ontology GO:0008113; peptide-methionine (S)-S-oxide reductase activity GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO:0006979response to oxidative stress


Orthologs (automatic annotation)
TAIR AT4G25130 : peptide met sulfoxide reductase 4
RAP-DB (Rice) LOC_Os10g41400.1 : peptide methionine sulfoxide reductase, putative, expressed
MaizeGDB (Corn) Zm00025a003385
Brachypodium KQJ97778 , KQJ97826
Barley HORVU1Hr1G055520.1
Wheat TraesCS1B02G230500 , TraesCS1D02G219100 , TraesCS1A02G217300
Populus -


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cDNA sequences
Sobic.001G295300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G291900 expressed protein -
2 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
3 Sobic.001G308800 expressed protein K18065: Cdc25 family phosphatase
4 Sobic.001G447700 expressed protein -
5 Sobic.001G006400 DANA2, putative, expressed -
6 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
7 Sobic.003G022300 SOUL heme-binding protein, putative, expressed -
8 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
9 Sobic.001G104800 expressed protein -
10 Sobic.004G228200 thioredoxin, putative, expressed K03671: thioredoxin 1
11 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
12 Sobic.001G391900 nifU, putative, expressed -
13 Sobic.002G128900 thioesterase family protein, putative, expressed -
14 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
15 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
16 Sobic.004G280100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
18 Sobic.002G056800 YGGT family protein, putative, expressed -
19 Sobic.002G353300 Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
20 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase


Gene co-expression network
sample Sobic001G295300 Sobic001G295300 Sobic001G291900 Sobic001G291900 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic007G208300 Sobic007G208300 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G104800 Sobic001G104800 Sobic001G295300--Sobic001G104800 Sobic001G368500 Sobic001G368500 Sobic001G291900--Sobic001G368500 Sobic001G291900--Sobic001G104800 Sobic003G085000 Sobic003G085000 Sobic001G291900--Sobic003G085000 Sobic004G336000 Sobic004G336000 Sobic001G291900--Sobic004G336000 Sobic005G002900 Sobic005G002900 Sobic001G291900--Sobic005G002900 Sobic009G059300 Sobic009G059300 Sobic001G291900--Sobic009G059300 Sobic001G309300 Sobic001G309300 Sobic001G291900--Sobic001G309300 Sobic006G055800 Sobic006G055800 Sobic001G291900--Sobic006G055800 Sobic006G106400 Sobic006G106400 Sobic001G291900--Sobic006G106400 Sobic003G008900--Sobic001G295300 Sobic003G008900--Sobic001G308800 Sobic001G023700 Sobic001G023700 Sobic003G008900--Sobic001G023700 Sobic003G008900--Sobic003G022300 Sobic002G065200 Sobic002G065200 Sobic003G008900--Sobic002G065200 Sobic003G008900--Sobic004G227200 Sobic001G221300 Sobic001G221300 Sobic003G008900--Sobic001G221300 Sobic007G178500 Sobic007G178500 Sobic003G008900--Sobic007G178500 Sobic003G008900--Sobic001G006400 Sobic001G029100 Sobic001G029100 Sobic001G308800--Sobic001G029100 Sobic009G143100 Sobic009G143100 Sobic001G308800--Sobic009G143100 Sobic001G308800--Sobic001G295300 Sobic001G308800--Sobic001G447700 Sobic001G308800--Sobic001G104800 Sobic001G308800--Sobic001G291900 Sobic002G033800 Sobic002G033800 Sobic001G308800--Sobic002G033800 Sobic004G183100 Sobic004G183100 Sobic001G308800--Sobic004G183100 Sobic009G030900 Sobic009G030900 Sobic001G308800--Sobic009G030900 Sobic001G447700--Sobic001G291900 Sobic001G447700--Sobic003G085000 Sobic006G256600 Sobic006G256600 Sobic001G447700--Sobic006G256600 Sobic001G035800 Sobic001G035800 Sobic001G447700--Sobic001G035800 Sobic001G447700--Sobic001G104800 Sobic002G198600 Sobic002G198600 Sobic001G447700--Sobic002G198600 Sobic001G447700--Sobic001G295300 Sobic001G447700--Sobic001G308800 Sobic006G107600 Sobic006G107600 Sobic001G447700--Sobic006G107600 Sobic001G006400--Sobic001G295300 Sobic001G006400--Sobic001G308800 Sobic008G063200 Sobic008G063200 Sobic001G006400--Sobic008G063200 Sobic002G102200 Sobic002G102200 Sobic001G006400--Sobic002G102200 Sobic003G291400 Sobic003G291400 Sobic001G006400--Sobic003G291400 Sobic001G006400--Sobic003G008900 Sobic001G006400--Sobic001G447700 Sobic003G439100 Sobic003G439100 Sobic001G006400--Sobic003G439100 Sobic008G186400 Sobic008G186400 Sobic001G006400--Sobic008G186400 Sobic001G531400 Sobic001G531400 Sobic007G208300--Sobic001G531400 Sobic007G208300--Sobic001G291900 Sobic007G208300--Sobic003G085000 Sobic007G208300--Sobic004G336000 Sobic004G301200 Sobic004G301200 Sobic007G208300--Sobic004G301200 Sobic007G208300--Sobic001G295300 Sobic007G208300--Sobic001G104800 Sobic006G132000 Sobic006G132000 Sobic007G208300--Sobic006G132000 Sobic004G055500 Sobic004G055500 Sobic007G208300--Sobic004G055500 Sobic002G227700 Sobic002G227700 Sobic003G022300--Sobic002G227700 Sobic004G020300 Sobic004G020300 Sobic003G022300--Sobic004G020300 Sobic003G022300--Sobic001G221300 Sobic003G022300--Sobic001G295300 Sobic009G210200 Sobic009G210200 Sobic003G022300--Sobic009G210200 Sobic001G033100 Sobic001G033100 Sobic003G022300--Sobic001G033100 Sobic006G067400 Sobic006G067400 Sobic003G022300--Sobic006G067400 Sobic004G343900 Sobic004G343900 Sobic003G022300--Sobic004G343900 Sobic007G004700 Sobic007G004700 Sobic003G022300--Sobic007G004700 Sobic007G223500 Sobic007G223500 Sobic004G227200--Sobic007G223500 Sobic006G093900 Sobic006G093900 Sobic004G227200--Sobic006G093900 Sobic002G316700 Sobic002G316700 Sobic004G227200--Sobic002G316700 Sobic004G227200--Sobic001G035800 Sobic004G227200--Sobic009G143100 Sobic001G168800 Sobic001G168800 Sobic004G227200--Sobic001G168800 Sobic004G175500 Sobic004G175500 Sobic004G227200--Sobic004G175500 Sobic003G387800 Sobic003G387800 Sobic004G227200--Sobic003G387800 Sobic002G030500 Sobic002G030500 Sobic004G227200--Sobic002G030500 Sobic001G104800--Sobic001G291900 Sobic001G104800--Sobic009G030900 Sobic001G104800--Sobic001G368500 Sobic001G469933 Sobic001G469933 Sobic001G104800--Sobic001G469933 Sobic001G122400 Sobic001G122400 Sobic001G104800--Sobic001G122400 Sobic003G324700 Sobic003G324700 Sobic001G104800--Sobic003G324700 Sobic004G335800 Sobic004G335800 Sobic001G104800--Sobic004G335800 Sobic007G090400 Sobic007G090400 Sobic001G104800--Sobic007G090400 Sobic002G152800 Sobic002G152800 Sobic001G104800--Sobic002G152800
Octagon: transcription factors


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