Gene annotation
Transcriptome id Sobic.004G228200.1
Synonym ATHM4, Sb04g027260, ATM4, TRX-M4
Functional annotation thioredoxin, putative, expressed
UniProt C5XYA2
Pfam PF13098
Panther DB PTHR10438 PTHR10438:SF255
NCBI CDD KOG0910; Thioredoxin-like protein
KEGG Orthology K03671; thioredoxin 1
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT3G15360 : thioredoxin M-type 4
RAP-DB (Rice) LOC_Os02g42700.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a032119 , Zm00025a020994
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G228200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
2 Sobic.001G291900 expressed protein -
3 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
4 Sobic.006G256600 expressed protein -
5 Sobic.001G447700 expressed protein -
6 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
7 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
8 Sobic.001G531400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
9 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
10 Sobic.001G309300 expressed protein -
11 Sobic.001G104800 expressed protein -
12 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
14 Sobic.010G140600 bolA, putative, expressed -
15 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
16 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
17 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
18 Sobic.002G056800 YGGT family protein, putative, expressed -
19 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
20 Sobic.009G068300 chloroplast lumen common family protein, putative, expressed -


Gene co-expression network
sample Sobic004G228200 Sobic004G228200 Sobic001G295300 Sobic001G295300 Sobic004G228200--Sobic001G295300 Sobic001G291900 Sobic001G291900 Sobic004G228200--Sobic001G291900 Sobic003G085000 Sobic003G085000 Sobic004G228200--Sobic003G085000 Sobic006G256600 Sobic006G256600 Sobic004G228200--Sobic006G256600 Sobic001G447700 Sobic001G447700 Sobic004G228200--Sobic001G447700 Sobic010G255100 Sobic010G255100 Sobic004G228200--Sobic010G255100 Sobic007G208300 Sobic007G208300 Sobic004G228200--Sobic007G208300 Sobic001G531400 Sobic001G531400 Sobic004G228200--Sobic001G531400 Sobic003G343400 Sobic003G343400 Sobic004G228200--Sobic003G343400 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G104800 Sobic001G104800 Sobic001G295300--Sobic001G104800 Sobic001G368500 Sobic001G368500 Sobic001G291900--Sobic001G368500 Sobic001G291900--Sobic001G104800 Sobic001G291900--Sobic003G085000 Sobic004G336000 Sobic004G336000 Sobic001G291900--Sobic004G336000 Sobic005G002900 Sobic005G002900 Sobic001G291900--Sobic005G002900 Sobic009G059300 Sobic009G059300 Sobic001G291900--Sobic009G059300 Sobic001G309300 Sobic001G309300 Sobic001G291900--Sobic001G309300 Sobic006G055800 Sobic006G055800 Sobic001G291900--Sobic006G055800 Sobic006G106400 Sobic006G106400 Sobic001G291900--Sobic006G106400 Sobic003G085000--Sobic006G256600 Sobic003G085000--Sobic001G291900 Sobic003G085000--Sobic006G055800 Sobic003G085000--Sobic010G255100 Sobic003G085000--Sobic004G336000 Sobic003G085000--Sobic001G531400 Sobic003G085000--Sobic005G002900 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic006G256600--Sobic010G255100 Sobic006G256600--Sobic003G085000 Sobic006G256600--Sobic001G291900 Sobic006G210400 Sobic006G210400 Sobic006G256600--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic006G256600--Sobic002G297400 Sobic006G256600--Sobic006G055800 Sobic006G256600--Sobic005G002900 Sobic006G256600--Sobic001G309300 Sobic006G256600--Sobic004G065300 Sobic001G447700--Sobic001G291900 Sobic001G447700--Sobic003G085000 Sobic001G447700--Sobic006G256600 Sobic001G035800 Sobic001G035800 Sobic001G447700--Sobic001G035800 Sobic001G447700--Sobic001G104800 Sobic002G198600 Sobic002G198600 Sobic001G447700--Sobic002G198600 Sobic001G447700--Sobic001G295300 Sobic001G447700--Sobic001G308800 Sobic006G107600 Sobic006G107600 Sobic001G447700--Sobic006G107600 Sobic010G255100--Sobic006G256600 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500 Sobic007G208300--Sobic001G531400 Sobic007G208300--Sobic001G291900 Sobic007G208300--Sobic003G085000 Sobic007G208300--Sobic004G336000 Sobic004G301200 Sobic004G301200 Sobic007G208300--Sobic004G301200 Sobic007G208300--Sobic001G295300 Sobic007G208300--Sobic001G104800 Sobic006G132000 Sobic006G132000 Sobic007G208300--Sobic006G132000 Sobic004G055500 Sobic004G055500 Sobic007G208300--Sobic004G055500 Sobic001G531400--Sobic001G291900 Sobic001G531400--Sobic003G085000 Sobic001G531400--Sobic007G208300 Sobic007G090400 Sobic007G090400 Sobic001G531400--Sobic007G090400 Sobic001G531400--Sobic004G336000 Sobic001G531400--Sobic006G106400 Sobic001G122400 Sobic001G122400 Sobic001G531400--Sobic001G122400 Sobic001G531400--Sobic001G104800 Sobic001G531400--Sobic006G055800 Sobic001G327800 Sobic001G327800 Sobic003G343400--Sobic001G327800 Sobic002G246500 Sobic002G246500 Sobic003G343400--Sobic002G246500 Sobic002G231200 Sobic002G231200 Sobic003G343400--Sobic002G231200 Sobic003G343400--Sobic006G210400 Sobic004G054400 Sobic004G054400 Sobic003G343400--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic003G343400--Sobic001G512500 Sobic001G032700 Sobic001G032700 Sobic003G343400--Sobic001G032700 Sobic010G140600 Sobic010G140600 Sobic003G343400--Sobic010G140600 Sobic001G065600 Sobic001G065600 Sobic003G343400--Sobic001G065600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.