Gene annotation
Transcriptome id Sobic.003G008900.1
Synonym Sb03g000950
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt A0A1B6Q0U1 , C6JRY7
Pfam PF03446 PF00389
Panther DB PTHR10996 PTHR10996:SF139
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K15919; glyoxylate/hydroxypyruvate reductase
Gene Ontology GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G79870 : D-isomer specific 2-hydroxyacid dehydrogenase family protein
RAP-DB (Rice) LOC_Os01g12830.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004040 , Zm00025a035981
Brachypodium KQK03404 , KQK03403 , KQJ95825
Barley HORVU2Hr1G005140.1 , HORVU2Hr1G005140.6 , HORVU2Hr1G005140.7 , HORVU2Hr1G005140.5 , HORVU2Hr1G005140.17 , HORVU2Hr1G005140.20 , HORVU3Hr1G031200.5 , HORVU3Hr1G031200.4 , HORVU3Hr1G031200.3 , HORVU3Hr1G031200.2 , HORVU3Hr1G031200.1
Wheat TraesCS3A02G153500 , TraesCS3B02G180100
Populus -


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cDNA sequences
Sobic.003G008900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
2 Sobic.001G308800 expressed protein K18065: Cdc25 family phosphatase
3 Sobic.001G023700 expressed protein -
4 Sobic.003G022300 SOUL heme-binding protein, putative, expressed -
5 Sobic.002G065200 pentatricopeptide, putative, expressed -
6 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
7 Sobic.001G221300 alcohol oxidase, putative, expressed K17756: long-chain-alcohol oxidase
8 Sobic.007G178500 cytochrome P450, putative, expressed -
9 Sobic.001G006400 DANA2, putative, expressed -
10 Sobic.001G447700 expressed protein -
11 Sobic.004G016400 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
12 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G199000 bZIP transcription factor domain containing protein, expressed -
14 Sobic.002G227700 gibberellin receptor GID1L2, putative, expressed -
15 Sobic.003G150600 pectinacetylesterase domain containing protein, expressed -
16 Sobic.001G104800 expressed protein -
17 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
18 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
19 Sobic.001G391900 nifU, putative, expressed -
20 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family


Gene co-expression network
sample Sobic003G008900 Sobic003G008900 Sobic001G295300 Sobic001G295300 Sobic003G008900--Sobic001G295300 Sobic001G308800 Sobic001G308800 Sobic003G008900--Sobic001G308800 Sobic001G023700 Sobic001G023700 Sobic003G008900--Sobic001G023700 Sobic003G022300 Sobic003G022300 Sobic003G008900--Sobic003G022300 Sobic002G065200 Sobic002G065200 Sobic003G008900--Sobic002G065200 Sobic004G227200 Sobic004G227200 Sobic003G008900--Sobic004G227200 Sobic001G221300 Sobic001G221300 Sobic003G008900--Sobic001G221300 Sobic007G178500 Sobic007G178500 Sobic003G008900--Sobic007G178500 Sobic001G006400 Sobic001G006400 Sobic003G008900--Sobic001G006400 Sobic001G291900 Sobic001G291900 Sobic001G295300--Sobic001G291900 Sobic001G295300--Sobic003G008900 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G295300--Sobic001G006400 Sobic007G208300 Sobic007G208300 Sobic001G295300--Sobic007G208300 Sobic001G295300--Sobic003G022300 Sobic001G295300--Sobic004G227200 Sobic001G104800 Sobic001G104800 Sobic001G295300--Sobic001G104800 Sobic001G029100 Sobic001G029100 Sobic001G308800--Sobic001G029100 Sobic009G143100 Sobic009G143100 Sobic001G308800--Sobic009G143100 Sobic001G308800--Sobic001G295300 Sobic001G308800--Sobic001G447700 Sobic001G308800--Sobic001G104800 Sobic001G308800--Sobic001G291900 Sobic002G033800 Sobic002G033800 Sobic001G308800--Sobic002G033800 Sobic004G183100 Sobic004G183100 Sobic001G308800--Sobic004G183100 Sobic009G030900 Sobic009G030900 Sobic001G308800--Sobic009G030900 Sobic007G071500 Sobic007G071500 Sobic001G023700--Sobic007G071500 Sobic001G023700--Sobic009G143100 Sobic001G177000 Sobic001G177000 Sobic001G023700--Sobic001G177000 Sobic002G288300 Sobic002G288300 Sobic001G023700--Sobic002G288300 Sobic006G264900 Sobic006G264900 Sobic001G023700--Sobic006G264900 Sobic006G105900 Sobic006G105900 Sobic001G023700--Sobic006G105900 Sobic009G091800 Sobic009G091800 Sobic001G023700--Sobic009G091800 Sobic010G011800 Sobic010G011800 Sobic001G023700--Sobic010G011800 Sobic002G198600 Sobic002G198600 Sobic001G023700--Sobic002G198600 Sobic002G227700 Sobic002G227700 Sobic003G022300--Sobic002G227700 Sobic004G020300 Sobic004G020300 Sobic003G022300--Sobic004G020300 Sobic003G022300--Sobic001G221300 Sobic003G022300--Sobic001G295300 Sobic009G210200 Sobic009G210200 Sobic003G022300--Sobic009G210200 Sobic001G033100 Sobic001G033100 Sobic003G022300--Sobic001G033100 Sobic006G067400 Sobic006G067400 Sobic003G022300--Sobic006G067400 Sobic004G343900 Sobic004G343900 Sobic003G022300--Sobic004G343900 Sobic007G004700 Sobic007G004700 Sobic003G022300--Sobic007G004700 Sobic002G065200--Sobic002G198600 Sobic008G063500 Sobic008G063500 Sobic002G065200--Sobic008G063500 Sobic002G065200--Sobic010G011800 Sobic004G175500 Sobic004G175500 Sobic002G065200--Sobic004G175500 Sobic002G065200--Sobic004G227200 Sobic002G065200--Sobic001G029100 Sobic002G316700 Sobic002G316700 Sobic002G065200--Sobic002G316700 Sobic002G065200--Sobic001G177000 Sobic002G065200--Sobic002G288300 Sobic007G223500 Sobic007G223500 Sobic004G227200--Sobic007G223500 Sobic006G093900 Sobic006G093900 Sobic004G227200--Sobic006G093900 Sobic004G227200--Sobic002G316700 Sobic001G035800 Sobic001G035800 Sobic004G227200--Sobic001G035800 Sobic004G227200--Sobic009G143100 Sobic001G168800 Sobic001G168800 Sobic004G227200--Sobic001G168800 Sobic004G227200--Sobic004G175500 Sobic003G387800 Sobic003G387800 Sobic004G227200--Sobic003G387800 Sobic002G030500 Sobic002G030500 Sobic004G227200--Sobic002G030500 Sobic003G069200 Sobic003G069200 Sobic001G221300--Sobic003G069200 Sobic003G150600 Sobic003G150600 Sobic001G221300--Sobic003G150600 Sobic003G433900 Sobic003G433900 Sobic001G221300--Sobic003G433900 Sobic001G221300--Sobic002G198600 Sobic001G221300--Sobic002G227700 Sobic003G386300 Sobic003G386300 Sobic001G221300--Sobic003G386300 Sobic006G248200 Sobic006G248200 Sobic001G221300--Sobic006G248200 Sobic006G013800 Sobic006G013800 Sobic001G221300--Sobic006G013800 Sobic004G311100 Sobic004G311100 Sobic001G221300--Sobic004G311100 Sobic007G023300 Sobic007G023300 Sobic007G178500--Sobic007G023300 Sobic003G187000 Sobic003G187000 Sobic007G178500--Sobic003G187000 Sobic007G178500--Sobic008G063500 Sobic005G021600 Sobic005G021600 Sobic007G178500--Sobic005G021600 Sobic001G498300 Sobic001G498300 Sobic007G178500--Sobic001G498300 Sobic001G339100 Sobic001G339100 Sobic007G178500--Sobic001G339100 Sobic009G028400 Sobic009G028400 Sobic007G178500--Sobic009G028400 Sobic010G265500 Sobic010G265500 Sobic007G178500--Sobic010G265500 Sobic010G218600 Sobic010G218600 Sobic007G178500--Sobic010G218600 Sobic001G006400--Sobic001G295300 Sobic001G006400--Sobic001G308800 Sobic008G063200 Sobic008G063200 Sobic001G006400--Sobic008G063200 Sobic002G102200 Sobic002G102200 Sobic001G006400--Sobic002G102200 Sobic003G291400 Sobic003G291400 Sobic001G006400--Sobic003G291400 Sobic001G006400--Sobic003G008900 Sobic001G006400--Sobic001G447700 Sobic003G439100 Sobic003G439100 Sobic001G006400--Sobic003G439100 Sobic008G186400 Sobic008G186400 Sobic001G006400--Sobic008G186400
Octagon: transcription factors


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