Gene annotation
Transcriptome id Sobic.001G023700.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QGZ0
Pfam PF12023
Panther DB PTHR33193 PTHR33193:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62640 : Protein of unknown function (DUF3511)
RAP-DB (Rice) LOC_Os03g61590.1 : expressed protein
MaizeGDB (Corn) Zm00025a008928
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
2 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
3 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
4 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
5 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
6 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
7 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
8 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
9 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
10 Sobic.004G249800 expressed protein -
11 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
12 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
13 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
14 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
15 Sobic.005G194100 expressed protein -
16 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
17 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
18 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
19 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
20 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase


Gene co-expression network
sample Sobic001G023700 Sobic001G023700 Sobic007G071500 Sobic007G071500 Sobic001G023700--Sobic007G071500 Sobic009G143100 Sobic009G143100 Sobic001G023700--Sobic009G143100 Sobic001G177000 Sobic001G177000 Sobic001G023700--Sobic001G177000 Sobic002G288300 Sobic002G288300 Sobic001G023700--Sobic002G288300 Sobic006G264900 Sobic006G264900 Sobic001G023700--Sobic006G264900 Sobic006G105900 Sobic006G105900 Sobic001G023700--Sobic006G105900 Sobic009G091800 Sobic009G091800 Sobic001G023700--Sobic009G091800 Sobic010G011800 Sobic010G011800 Sobic001G023700--Sobic010G011800 Sobic002G198600 Sobic002G198600 Sobic001G023700--Sobic002G198600 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic004G249800 Sobic004G249800 Sobic007G071500--Sobic004G249800 Sobic004G343300 Sobic004G343300 Sobic007G071500--Sobic004G343300 Sobic002G316700 Sobic002G316700 Sobic007G071500--Sobic002G316700 Sobic008G134800 Sobic008G134800 Sobic007G071500--Sobic008G134800 Sobic004G035500 Sobic004G035500 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic007G071500--Sobic001G177000 Sobic009G143100--Sobic007G071500 Sobic009G143100--Sobic002G316700 Sobic007G223500 Sobic007G223500 Sobic009G143100--Sobic007G223500 Sobic009G143100--Sobic008G134800 Sobic003G387800 Sobic003G387800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic009G143100--Sobic006G105900 Sobic009G143100--Sobic004G249800 Sobic004G056900 Sobic004G056900 Sobic001G177000--Sobic004G056900 Sobic002G242000 Sobic002G242000 Sobic001G177000--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G177000--Sobic001G046900 Sobic010G241000 Sobic010G241000 Sobic001G177000--Sobic010G241000 Sobic002G030200 Sobic002G030200 Sobic001G177000--Sobic002G030200 Sobic008G063500 Sobic008G063500 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic007G136900 Sobic007G136900 Sobic001G177000--Sobic007G136900 Sobic002G338000 Sobic002G338000 Sobic001G177000--Sobic002G338000 Sobic002G288300--Sobic009G091800 Sobic010G022100 Sobic010G022100 Sobic002G288300--Sobic010G022100 Sobic010G000500 Sobic010G000500 Sobic002G288300--Sobic010G000500 Sobic004G234200 Sobic004G234200 Sobic002G288300--Sobic004G234200 Sobic002G288300--Sobic002G338000 Sobic002G414400 Sobic002G414400 Sobic002G288300--Sobic002G414400 Sobic002G288300--Sobic010G011800 Sobic004G193400 Sobic004G193400 Sobic002G288300--Sobic004G193400 Sobic002G288300--Sobic006G264900 Sobic006G264900--Sobic009G234600 Sobic006G264900--Sobic010G000500 Sobic006G264900--Sobic006G105900 Sobic006G264900--Sobic010G241000 Sobic005G042000 Sobic005G042000 Sobic006G264900--Sobic005G042000 Sobic002G329600 Sobic002G329600 Sobic006G264900--Sobic002G329600 Sobic006G264900--Sobic001G046900 Sobic001G078000 Sobic001G078000 Sobic006G264900--Sobic001G078000 Sobic006G264900--Sobic001G177000 Sobic006G105900--Sobic001G078000 Sobic004G235200 Sobic004G235200 Sobic006G105900--Sobic004G235200 Sobic006G105900--Sobic005G042000 Sobic006G105900--Sobic007G071500 Sobic006G105900--Sobic010G241000 Sobic006G105900--Sobic004G249800 Sobic006G105900--Sobic003G052500 Sobic006G105900--Sobic004G343300 Sobic006G105900--Sobic006G264900 Sobic008G051000 Sobic008G051000 Sobic009G091800--Sobic008G051000 Sobic009G091800--Sobic002G288300 Sobic009G091800--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic009G091800--Sobic002G297300 Sobic009G091800--Sobic010G022100 Sobic006G264201 Sobic006G264201 Sobic009G091800--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic009G091800--Sobic004G238500 Sobic009G091800--Sobic010G000500 Sobic007G116950 Sobic007G116950 Sobic009G091800--Sobic007G116950 Sobic010G011800--Sobic010G022100 Sobic010G011800--Sobic002G288300 Sobic010G011800--Sobic009G091800 Sobic010G011800--Sobic010G000500 Sobic010G011800--Sobic002G198600 Sobic010G011800--Sobic002G030200 Sobic010G011800--Sobic004G238500 Sobic010G011800--Sobic004G234200 Sobic010G011800--Sobic001G177000 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic004G175500 Sobic004G175500 Sobic002G198600--Sobic004G175500 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic003G386300 Sobic003G386300 Sobic002G198600--Sobic003G386300 Sobic009G030900 Sobic009G030900 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic002G198600--Sobic010G011800 Sobic004G311100 Sobic004G311100 Sobic002G198600--Sobic004G311100
Octagon: transcription factors


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