Gene annotation
Transcriptome id Sobic.003G277400.1
Synonym Sb03g032920
Functional annotation violaxanthin de-epoxidase, putative, expressed
UniProt A0A1B6Q5Q9
Pfam -
Panther DB PTHR33970 PTHR33970:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G21860 : violaxanthin de-epoxidase-related
RAP-DB (Rice) LOC_Os01g51860.1 : violaxanthin de-epoxidase, putative, expressed
MaizeGDB (Corn) Zm00025a038971
Brachypodium KQK09481
Barley HORVU3Hr1G067770.1 , HORVU3Hr1G067770.3 , HORVU3Hr1G067770.9 , HORVU3Hr1G067770.2 , HORVU3Hr1G067770.4 , HORVU3Hr1G067770.5 , HORVU3Hr1G067770.6 , HORVU3Hr1G067770.7 , HORVU3Hr1G067770.8
Wheat TraesCS3B02G275700 , TraesCS3D02G247100 , TraesCS3A02G244300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
2 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
3 Sobic.004G154700 choline/ethanolamine kinase, putative, expressed -
4 Sobic.002G258400 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
5 Sobic.004G154800 expressed protein -
6 Sobic.001G220000 PPR repeat containing protein, expressed -
7 Sobic.003G185600 asp/Glu racemase, putative, expressed -
8 Sobic.006G108200 expressed protein -
9 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
10 Sobic.009G123300 NAD dependent epimerase/dehydratase family protein, putative, expressed K06118: SQD1, UDP-sulfoquinovose synthase
11 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
12 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
13 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
14 Sobic.006G270200 smr domain containing protein, expressed K07456: DNA mismatch repair protein MutS2
15 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
16 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
17 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
18 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
19 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
20 Sobic.001G160800 integral membrane protein DUF6 containing protein, expressed -


Gene co-expression network
sample Sobic003G277400 Sobic003G277400 Sobic007G010800 Sobic007G010800 Sobic003G277400--Sobic007G010800 Sobic009G040400 Sobic009G040400 Sobic003G277400--Sobic009G040400 Sobic004G154700 Sobic004G154700 Sobic003G277400--Sobic004G154700 Sobic002G258400 Sobic002G258400 Sobic003G277400--Sobic002G258400 Sobic004G154800 Sobic004G154800 Sobic003G277400--Sobic004G154800 Sobic001G220000 Sobic001G220000 Sobic003G277400--Sobic001G220000 Sobic003G185600 Sobic003G185600 Sobic003G277400--Sobic003G185600 Sobic006G108200 Sobic006G108200 Sobic003G277400--Sobic006G108200 Sobic002G356900 Sobic002G356900 Sobic003G277400--Sobic002G356900 Sobic007G010800--Sobic002G356900 Sobic001G018000 Sobic001G018000 Sobic007G010800--Sobic001G018000 Sobic010G100900 Sobic010G100900 Sobic007G010800--Sobic010G100900 Sobic007G010800--Sobic009G040400 Sobic002G351200 Sobic002G351200 Sobic007G010800--Sobic002G351200 Sobic003G003450 Sobic003G003450 Sobic007G010800--Sobic003G003450 Sobic004G268400 Sobic004G268400 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic003G186800 Sobic003G186800 Sobic007G010800--Sobic003G186800 Sobic009G040400--Sobic007G010800 Sobic005G132000 Sobic005G132000 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic009G040400--Sobic005G201000 Sobic003G029500 Sobic003G029500 Sobic009G040400--Sobic003G029500 Sobic010G092350 Sobic010G092350 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic004G154700--Sobic003G277400 Sobic004G154700--Sobic009G040400 Sobic004G154700--Sobic007G010800 Sobic004G154700--Sobic005G132000 Sobic005G038500 Sobic005G038500 Sobic004G154700--Sobic005G038500 Sobic003G011900 Sobic003G011900 Sobic004G154700--Sobic003G011900 Sobic003G057233 Sobic003G057233 Sobic004G154700--Sobic003G057233 Sobic004G154700--Sobic003G105900 Sobic001G282800 Sobic001G282800 Sobic004G154700--Sobic001G282800 Sobic002G258400--Sobic003G277400 Sobic009G123300 Sobic009G123300 Sobic002G258400--Sobic009G123300 Sobic002G258400--Sobic004G154800 Sobic002G258400--Sobic003G185600 Sobic002G258400--Sobic006G108200 Sobic003G275200 Sobic003G275200 Sobic002G258400--Sobic003G275200 Sobic008G088821 Sobic008G088821 Sobic002G258400--Sobic008G088821 Sobic002G258400--Sobic007G010800 Sobic002G258400--Sobic001G220000 Sobic004G055000 Sobic004G055000 Sobic004G154800--Sobic004G055000 Sobic004G154800--Sobic003G275200 Sobic001G167900 Sobic001G167900 Sobic004G154800--Sobic001G167900 Sobic004G154800--Sobic006G108200 Sobic004G124400 Sobic004G124400 Sobic004G154800--Sobic004G124400 Sobic004G028300 Sobic004G028300 Sobic004G154800--Sobic004G028300 Sobic004G154800--Sobic001G220000 Sobic002G351600 Sobic002G351600 Sobic004G154800--Sobic002G351600 Sobic010G062500 Sobic010G062500 Sobic004G154800--Sobic010G062500 Sobic001G220000--Sobic004G124400 Sobic001G220000--Sobic004G317700 Sobic004G300100 Sobic004G300100 Sobic001G220000--Sobic004G300100 Sobic001G220000--Sobic006G108200 Sobic001G220000--Sobic002G356900 Sobic010G231500 Sobic010G231500 Sobic001G220000--Sobic010G231500 Sobic001G436400 Sobic001G436400 Sobic001G220000--Sobic001G436400 Sobic001G220000--Sobic004G154800 Sobic001G220000--Sobic002G351600 Sobic003G185600--Sobic007G010800 Sobic007G087100 Sobic007G087100 Sobic003G185600--Sobic007G087100 Sobic003G185600--Sobic008G088821 Sobic003G185600--Sobic001G220000 Sobic005G028800 Sobic005G028800 Sobic003G185600--Sobic005G028800 Sobic003G185600--Sobic001G436400 Sobic003G185600--Sobic002G356900 Sobic001G015200 Sobic001G015200 Sobic003G185600--Sobic001G015200 Sobic003G185600--Sobic003G186800 Sobic006G108200--Sobic003G275200 Sobic006G108200--Sobic002G351600 Sobic006G108200--Sobic004G055000 Sobic006G108200--Sobic004G028300 Sobic006G108200--Sobic004G154800 Sobic002G200900 Sobic002G200900 Sobic006G108200--Sobic002G200900 Sobic006G108200--Sobic001G220000 Sobic006G108200--Sobic001G167900 Sobic005G134100 Sobic005G134100 Sobic006G108200--Sobic005G134100 Sobic002G356900--Sobic010G100900 Sobic002G356900--Sobic007G087100 Sobic002G356900--Sobic004G300100 Sobic003G380200 Sobic003G380200 Sobic002G356900--Sobic003G380200 Sobic009G170200 Sobic009G170200 Sobic002G356900--Sobic009G170200 Sobic002G356900--Sobic007G010800 Sobic002G356900--Sobic004G268400 Sobic002G356900--Sobic010G231500 Sobic002G356900--Sobic004G317700
Octagon: transcription factors


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