Gene annotation
| Transcriptome id | Sobic.001G160800.1 |
|---|---|
| Synonym | Sb01g014050 |
| Functional annotation | integral membrane protein DUF6 containing protein, expressed |
| UniProt | C5WS45 |
| Pfam | PF00892 |
| Panther DB | PTHR31218:SF70 PTHR31218 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016020; membrane GO:0016021integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT5G64700 : nodulin MtN21 /EamA-like transporter family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os12g33300.1 : integral membrane protein DUF6 containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a007340 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G207400 | hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed | K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase |
| 2 | Sobic.003G339700 | Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 3 | Sobic.002G417300 | Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 4 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 5 | Sobic.007G146400 | chaperonin Cpn60/TCP-1, putative, expressed | K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase |
| 6 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 7 | Sobic.002G225100 | bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 8 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 9 | Sobic.004G271600 | region found in RelA/SpoT proteins containing protein, expressed | - |
| 10 | Sobic.005G005400 | MATE efflux family protein(PubMedID : 26465154)@MATE efflux protein, putative, expressed | - |
| 11 | Sobic.002G213400 | expressed protein | - |
| 12 | Sobic.004G269800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 13 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 14 | Sobic.003G003450 | - | K01177: beta-amylase |
| 15 | Sobic.009G080900 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 16 | Sobic.002G321300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed | - |
| 17 | Sobic.006G232600 | amine oxidase, flavin-containing, domain containing protein, expressed | K02293: PDS, 15-cis-phytoene desaturase |
| 18 | Sobic.006G259600 | methylthioribose kinase, putative, expressed | K00899: 5-methylthioribose kinase |
| 19 | Sobic.010G100900 | alanyl-tRNA synthetase, putative, expressed | K01872: AARS, alanyl-tRNA synthetase |
| 20 | Sobic.002G081400 | ABC1 family domain containing protein, putative, expressed | K08869: ADCK, aarF domain-containing kinase |
Gene co-expression network
Octagon: transcription factors
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