Gene annotation
| Transcriptome id | Sobic.003G339700.1 |
|---|---|
| Synonym | SbCIPK29, CIPK2, CBL-interacting protein kinases, SnRK3.2 |
| Functional annotation | Interacting factor of CBLs (PubMedID : 19860013) CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| UniProt | A0A1B6Q6U3 , C4P7U9 |
| Pfam | PF14531 PF03822 |
| Panther DB | PTHR24347 PTHR24347:SF237 |
| NCBI CDD | KOG0583; Serine/threonine protein kinase |
| KEGG Orthology | - |
| Gene Ontology | GO:0007165; signal transduction |
Orthologs (automatic annotation)
| TAIR | AT5G58380 : SOS3-interacting protein 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g60910.1 : CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| MaizeGDB (Corn) | Zm00025a027037 |
| Brachypodium | KQK10373 , PNT65938 , KQJ93443 , KQJ93444 , KQJ93445 , KQK07055 , PNT65937 , PNT65936 |
| Barley | HORVU6Hr1G025940.2 , HORVU3Hr1G081420.1 , HORVU3Hr1G081420.2 , HORVU3Hr1G081420.3 , HORVU6Hr1G025940.3 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G417300 | Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 2 | Sobic.003G381700 | DUF647 domain containing protein, putative, expressed | - |
| 3 | Sobic.008G187100 | early-responsive to dehydration protein-related, putative, expressed | - |
| 4 | Sobic.007G146400 | chaperonin Cpn60/TCP-1, putative, expressed | K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase |
| 5 | Sobic.001G160800 | integral membrane protein DUF6 containing protein, expressed | - |
| 6 | Sobic.003G334000 | expressed protein | - |
| 7 | Sobic.001G057700 | heat stress transcription factor, putative, expressed | K09419: heat shock transcription factor, other eukaryote |
| 8 | Sobic.009G069300 | actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed | - |
| 9 | Sobic.006G066800 | 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed | K00700: GBE1, 1,4-alpha-glucan branching enzyme |
| 10 | Sobic.003G051000 | expressed protein | - |
| 11 | Sobic.004G276200 | peptide transporter PTR2, putative, expressed | - |
| 12 | Sobic.003G298600 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed | - |
| 13 | Sobic.001G498000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 14 | Sobic.004G322700 | - | - |
| 15 | Sobic.001G426800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed | - |
| 16 | Sobic.009G183101 | - | - |
| 17 | Sobic.004G269800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 18 | Sobic.001G391300 | "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed | K18819: inositol 3-alpha-galactosyltransferase |
| 19 | Sobic.007G062200 | expressed protein | - |
| 20 | Sobic.010G251300 | OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed | K08869: ADCK, aarF domain-containing kinase |
Gene co-expression network
Octagon: transcription factors
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