Gene annotation
Transcriptome id Sobic.003G298600.9,Sobic.003G298600.5,Sobic.003G298600.10,Sobic.003G298600.8,Sobic.003G298600.3,Sobic.003G298600.4,Sobic.003G298600.1,Sobic.003G298600.6,Sobic.003G298600.7,Sobic.003G298600.2
Synonym ARF3, auxin response factor, Sb03g034850, SbARF5, ETT
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt A0A1B6Q638 , A0A1B6Q645 , A0A1W0VZI8 , A0A1W0VZL2 , A0A1W0VZJ9 , A0A1W0VZJ6
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G33860 : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
RAP-DB (Rice) LOC_Os01g54990.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a040034 , Zm00025a044223 , Zm00025a027541
Brachypodium KQK09724 , PNT70708 , PNT70709 , PNT70707 , PNT70920 , KQK09770 , KQK05398 , KQK04890 , KQK04891 , KQK05397 , KQK04887 , KQK04889 , KQK04888
Barley HORVU1Hr1G076690.26 , HORVU1Hr1G076690.23 , HORVU1Hr1G076690.20 , HORVU1Hr1G076690.29 , HORVU1Hr1G076690.9 , HORVU1Hr1G076690.8 , HORVU1Hr1G076690.19 , HORVU1Hr1G076690.17 , HORVU1Hr1G076690.16 , HORVU1Hr1G076690.15 , HORVU1Hr1G076690.14 , HORVU1Hr1G076690.13 , HORVU1Hr1G076690.12 , HORVU1Hr1G076690.11 , HORVU1Hr1G076690.10 , HORVU3Hr1G072340.10 , HORVU1Hr1G076690.31 , HORVU1Hr1G076690.7 , HORVU1Hr1G076690.6 , HORVU1Hr1G076690.5 , HORVU1Hr1G076690.3 , HORVU1Hr1G076690.2 , HORVU1Hr1G076690.1 , HORVU3Hr1G072340.9 , HORVU3Hr1G072340.8 , HORVU3Hr1G072340.7 , HORVU3Hr1G072340.6 , HORVU3Hr1G072340.5 , HORVU3Hr1G072340.4 , HORVU3Hr1G072340.3 , HORVU3Hr1G072340.2 , HORVU3Hr1G072340.1
Wheat TraesCS3B02G327000 , TraesCS3A02G292400 , TraesCS1A02G334900 , TraesCS1D02G337400 , TraesCS1B02G347900 , TraesCS3D02G292100
Populus -


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cDNA sequences
Sobic.003G298600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G087900 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
2 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
4 Sobic.002G211800 AT-rich interaction region, putative, expressed -
5 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
6 Sobic.009G066900 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
7 Sobic.010G186700 glycosyl hydrolases family 17, putative, expressed -
8 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
9 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
10 Sobic.002G321300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
11 Sobic.001G057700 heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
12 Sobic.002G229600 - -
13 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
14 Sobic.009G183101 - -
15 Sobic.003G149800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
16 Sobic.003G294300 S4 domain containing protein, putative, expressed -
17 Sobic.005G143900 regulator of chromosome condensation, putative, expressed -
18 Sobic.003G381700 DUF647 domain containing protein, putative, expressed -
19 Sobic.010G089400 TLD family protein, putative, expressed -
20 Sobic.007G223000 hypothetical protein -


Gene co-expression network
sample Sobic003G298600 Sobic003G298600 Sobic005G087900 Sobic005G087900 Sobic003G298600--Sobic005G087900 Sobic003G339700 Sobic003G339700 Sobic003G298600--Sobic003G339700 Sobic007G146400 Sobic007G146400 Sobic003G298600--Sobic007G146400 Sobic002G211800 Sobic002G211800 Sobic003G298600--Sobic002G211800 Sobic003G362600 Sobic003G362600 Sobic003G298600--Sobic003G362600 Sobic009G066900 Sobic009G066900 Sobic003G298600--Sobic009G066900 Sobic010G186700 Sobic010G186700 Sobic003G298600--Sobic010G186700 Sobic001G251200 Sobic001G251200 Sobic003G298600--Sobic001G251200 Sobic002G110300 Sobic002G110300 Sobic003G298600--Sobic002G110300 Sobic005G087900--Sobic001G251200 Sobic003G036600 Sobic003G036600 Sobic005G087900--Sobic003G036600 Sobic001G521500 Sobic001G521500 Sobic005G087900--Sobic001G521500 Sobic001G128300 Sobic001G128300 Sobic005G087900--Sobic001G128300 Sobic002G229600 Sobic002G229600 Sobic005G087900--Sobic002G229600 Sobic005G087900--Sobic003G298600 Sobic007G056600 Sobic007G056600 Sobic005G087900--Sobic007G056600 Sobic005G087900--Sobic003G362600 Sobic001G399800 Sobic001G399800 Sobic005G087900--Sobic001G399800 Sobic002G417300 Sobic002G417300 Sobic003G339700--Sobic002G417300 Sobic003G381700 Sobic003G381700 Sobic003G339700--Sobic003G381700 Sobic008G187100 Sobic008G187100 Sobic003G339700--Sobic008G187100 Sobic003G339700--Sobic007G146400 Sobic001G160800 Sobic001G160800 Sobic003G339700--Sobic001G160800 Sobic003G334000 Sobic003G334000 Sobic003G339700--Sobic003G334000 Sobic001G057700 Sobic001G057700 Sobic003G339700--Sobic001G057700 Sobic009G069300 Sobic009G069300 Sobic003G339700--Sobic009G069300 Sobic006G066800 Sobic006G066800 Sobic003G339700--Sobic006G066800 Sobic007G146400--Sobic001G057700 Sobic005G132000 Sobic005G132000 Sobic007G146400--Sobic005G132000 Sobic006G257800 Sobic006G257800 Sobic007G146400--Sobic006G257800 Sobic002G383600 Sobic002G383600 Sobic007G146400--Sobic002G383600 Sobic006G051800 Sobic006G051800 Sobic007G146400--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic007G146400--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic007G146400--Sobic004G231900 Sobic007G146400--Sobic003G339700 Sobic007G146400--Sobic002G417300 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic002G211800--Sobic003G362600 Sobic003G362600--Sobic009G165700 Sobic003G362600--Sobic001G251200 Sobic003G362600--Sobic003G166750 Sobic003G362600--Sobic002G211800 Sobic008G087866 Sobic008G087866 Sobic003G362600--Sobic008G087866 Sobic003G362600--Sobic004G023000 Sobic003G093800 Sobic003G093800 Sobic003G362600--Sobic003G093800 Sobic004G091100 Sobic004G091100 Sobic003G362600--Sobic004G091100 Sobic001G441400 Sobic001G441400 Sobic003G362600--Sobic001G441400 Sobic003G309200 Sobic003G309200 Sobic009G066900--Sobic003G309200 Sobic008G124900 Sobic008G124900 Sobic009G066900--Sobic008G124900 Sobic003G119700 Sobic003G119700 Sobic009G066900--Sobic003G119700 Sobic002G134600 Sobic002G134600 Sobic009G066900--Sobic002G134600 Sobic006G033200 Sobic006G033200 Sobic009G066900--Sobic006G033200 Sobic001G333600 Sobic001G333600 Sobic009G066900--Sobic001G333600 Sobic009G108700 Sobic009G108700 Sobic009G066900--Sobic009G108700 Sobic008G047400 Sobic008G047400 Sobic009G066900--Sobic008G047400 Sobic007G006900 Sobic007G006900 Sobic009G066900--Sobic007G006900 Sobic010G186700--Sobic003G298600 Sobic010G186700--Sobic003G339700 Sobic001G361300 Sobic001G361300 Sobic010G186700--Sobic001G361300 Sobic001G178300 Sobic001G178300 Sobic010G186700--Sobic001G178300 Sobic004G131800 Sobic004G131800 Sobic010G186700--Sobic004G131800 Sobic010G186700--Sobic006G066800 Sobic010G186700--Sobic001G057700 Sobic010G186700--Sobic007G146400 Sobic001G466900 Sobic001G466900 Sobic010G186700--Sobic001G466900 Sobic001G251200--Sobic003G362600 Sobic001G251200--Sobic001G128300 Sobic001G251200--Sobic009G165700 Sobic004G004300 Sobic004G004300 Sobic001G251200--Sobic004G004300 Sobic004G261600 Sobic004G261600 Sobic001G251200--Sobic004G261600 Sobic001G451400 Sobic001G451400 Sobic001G251200--Sobic001G451400 Sobic001G043100 Sobic001G043100 Sobic001G251200--Sobic001G043100 Sobic006G131000 Sobic006G131000 Sobic001G251200--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic001G251200--Sobic001G281100 Sobic007G037301 Sobic007G037301 Sobic002G110300--Sobic007G037301 Sobic001G095500 Sobic001G095500 Sobic002G110300--Sobic001G095500 Sobic009G183000 Sobic009G183000 Sobic002G110300--Sobic009G183000 Sobic010G089100 Sobic010G089100 Sobic002G110300--Sobic010G089100 Sobic001G083800 Sobic001G083800 Sobic002G110300--Sobic001G083800 Sobic004G226600 Sobic004G226600 Sobic002G110300--Sobic004G226600 Sobic003G119800 Sobic003G119800 Sobic002G110300--Sobic003G119800 Sobic002G110300--Sobic007G006900 Sobic002G110300--Sobic002G134600
Octagon: transcription factors


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