Gene annotation
Transcriptome id Sobic.003G149800.7,Sobic.003G149800.5,Sobic.003G149800.6,Sobic.003G149800.4,Sobic.003G149800.3,Sobic.003G149800.1
Synonym ATSRP34, Sb03g013010,serine/arginine-rich (SR) family, SR1, sb-SR32, SRP34
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, expressed
UniProt M1H590 , A0A1B6Q3B7 , A0A1B6Q3B0 , A0A1B6Q3A1 , M1GSC2 , A0A1B6Q394
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF487
NCBI CDD KOG4212; RNA-binding protein hnRNP-M KOG0105Alternative splicing factor ASF/SF2 (RRM superfamily)
KEGG Orthology K12890; SFRS1, ASF, splicing factor, arginine/serine-rich 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G09140 : SERINE-ARGININE PROTEIN 30
RAP-DB (Rice) LOC_Os05g30140.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a024348
Brachypodium KQK04152 , KQK04151 , KQK04150
Barley HORVU3Hr1G064550.19 , HORVU3Hr1G064550.18 , HORVU3Hr1G064550.11 , HORVU3Hr1G064550.10 , HORVU3Hr1G064550.13 , HORVU3Hr1G064550.12 , HORVU3Hr1G064550.15 , HORVU3Hr1G064550.14 , HORVU3Hr1G064550.17 , HORVU3Hr1G064550.16 , HORVU3Hr1G064550.37 , HORVU3Hr1G064550.36 , HORVU3Hr1G064550.35 , HORVU3Hr1G064550.34 , HORVU3Hr1G064550.33 , HORVU3Hr1G064550.32 , HORVU3Hr1G064550.31 , HORVU3Hr1G064550.30 , HORVU3Hr1G064550.39 , HORVU3Hr1G064550.38 , HORVU3Hr1G064550.24 , HORVU3Hr1G064550.25 , HORVU3Hr1G064550.26 , HORVU3Hr1G064550.27 , HORVU3Hr1G064550.20 , HORVU3Hr1G064550.21 , HORVU3Hr1G064550.22 , HORVU3Hr1G064550.23 , HORVU3Hr1G064550.28 , HORVU3Hr1G064550.29 , HORVU3Hr1G064550.9 , HORVU3Hr1G064550.8 , HORVU3Hr1G064550.5 , HORVU3Hr1G064550.4 , HORVU3Hr1G064550.7 , HORVU3Hr1G064550.6 , HORVU3Hr1G064550.1 , HORVU3Hr1G064550.3 , HORVU3Hr1G064550.2
Wheat TraesCS3B02G293100 , TraesCS3B02G293100 , TraesCS1A02G229900 , TraesCS1A02G229900 , TraesCS3B02G293100 , TraesCS3B02G293100 , TraesCS1D02G232100 , TraesCS3B02G293100 , TraesCS3B02G293100 , TraesCS3D02G260200 , TraesCS3D02G260200 , TraesCS3D02G260200 , TraesCS3D02G260200 , TraesCS3D02G260200 , TraesCS1D02G232100 , TraesCS3A02G260000 , TraesCS3A02G260000 , TraesCS3A02G260000 , TraesCS3A02G260000 , TraesCS1B02G244200 , TraesCS1B02G244200 , TraesCS1B02G244200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G068350 - -
2 Sobic.001G083800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cyclic nucleotide-gated ion channel 2, putative, expressed K05391: cyclic nucleotide gated channel, plant
3 Sobic.003G298600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
4 Sobic.009G099200 VHS and GAT domain containing protein, expressed -
5 Sobic.004G124500 transporter family protein, putative, expressed -
6 Sobic.009G066900 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
7 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
8 Sobic.007G196900 expressed protein -
9 Sobic.001G426800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed -
10 Sobic.003G119700 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.003G230600 transcription factor X1, putative, expressed -
12 Sobic.005G087900 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
13 Sobic.003G031800 ZOS1-04 - C2H2 zinc finger protein, expressed -
14 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
15 Sobic.002G387200 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
16 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
17 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
18 Sobic.001G125500 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
19 Sobic.003G198200 "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
20 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2


Gene co-expression network
sample Sobic003G149800 Sobic003G149800 Sobic006G068350 Sobic006G068350 Sobic003G149800--Sobic006G068350 Sobic001G083800 Sobic001G083800 Sobic003G149800--Sobic001G083800 Sobic003G298600 Sobic003G298600 Sobic003G149800--Sobic003G298600 Sobic009G099200 Sobic009G099200 Sobic003G149800--Sobic009G099200 Sobic004G124500 Sobic004G124500 Sobic003G149800--Sobic004G124500 Sobic009G066900 Sobic009G066900 Sobic003G149800--Sobic009G066900 Sobic001G477700 Sobic001G477700 Sobic003G149800--Sobic001G477700 Sobic007G196900 Sobic007G196900 Sobic003G149800--Sobic007G196900 Sobic001G426800 Sobic001G426800 Sobic003G149800--Sobic001G426800 Sobic004G316700 Sobic004G316700 Sobic006G068350--Sobic004G316700 Sobic006G068350--Sobic003G149800 Sobic006G267600 Sobic006G267600 Sobic006G068350--Sobic006G267600 Sobic006G068350--Sobic001G477700 Sobic001G051700 Sobic001G051700 Sobic006G068350--Sobic001G051700 Sobic006G131000 Sobic006G131000 Sobic006G068350--Sobic006G131000 Sobic003G297500 Sobic003G297500 Sobic006G068350--Sobic003G297500 Sobic002G048700 Sobic002G048700 Sobic006G068350--Sobic002G048700 Sobic001G542450 Sobic001G542450 Sobic006G068350--Sobic001G542450 Sobic002G110300 Sobic002G110300 Sobic001G083800--Sobic002G110300 Sobic002G043500 Sobic002G043500 Sobic001G083800--Sobic002G043500 Sobic001G083800--Sobic003G149800 Sobic006G220300 Sobic006G220300 Sobic001G083800--Sobic006G220300 Sobic001G153200 Sobic001G153200 Sobic001G083800--Sobic001G153200 Sobic003G031800 Sobic003G031800 Sobic001G083800--Sobic003G031800 Sobic009G183000 Sobic009G183000 Sobic001G083800--Sobic009G183000 Sobic001G095500 Sobic001G095500 Sobic001G083800--Sobic001G095500 Sobic001G083800--Sobic003G298600 Sobic005G087900 Sobic005G087900 Sobic003G298600--Sobic005G087900 Sobic003G339700 Sobic003G339700 Sobic003G298600--Sobic003G339700 Sobic007G146400 Sobic007G146400 Sobic003G298600--Sobic007G146400 Sobic002G211800 Sobic002G211800 Sobic003G298600--Sobic002G211800 Sobic003G362600 Sobic003G362600 Sobic003G298600--Sobic003G362600 Sobic003G298600--Sobic009G066900 Sobic010G186700 Sobic010G186700 Sobic003G298600--Sobic010G186700 Sobic001G251200 Sobic001G251200 Sobic003G298600--Sobic001G251200 Sobic003G298600--Sobic002G110300 Sobic007G180600 Sobic007G180600 Sobic009G099200--Sobic007G180600 Sobic010G169900 Sobic010G169900 Sobic009G099200--Sobic010G169900 Sobic009G099200--Sobic004G124500 Sobic006G101800 Sobic006G101800 Sobic009G099200--Sobic006G101800 Sobic003G302200 Sobic003G302200 Sobic009G099200--Sobic003G302200 Sobic006G210700 Sobic006G210700 Sobic009G099200--Sobic006G210700 Sobic002G313900 Sobic002G313900 Sobic009G099200--Sobic002G313900 Sobic009G099200--Sobic001G251200 Sobic009G249700 Sobic009G249700 Sobic009G099200--Sobic009G249700 Sobic007G056600 Sobic007G056600 Sobic004G124500--Sobic007G056600 Sobic004G124500--Sobic007G180600 Sobic003G269800 Sobic003G269800 Sobic004G124500--Sobic003G269800 Sobic004G100200 Sobic004G100200 Sobic004G124500--Sobic004G100200 Sobic003G043800 Sobic003G043800 Sobic004G124500--Sobic003G043800 Sobic004G228800 Sobic004G228800 Sobic004G124500--Sobic004G228800 Sobic004G207900 Sobic004G207900 Sobic004G124500--Sobic004G207900 Sobic004G124500--Sobic009G099200 Sobic004G236200 Sobic004G236200 Sobic004G124500--Sobic004G236200 Sobic003G309200 Sobic003G309200 Sobic009G066900--Sobic003G309200 Sobic008G124900 Sobic008G124900 Sobic009G066900--Sobic008G124900 Sobic003G119700 Sobic003G119700 Sobic009G066900--Sobic003G119700 Sobic002G134600 Sobic002G134600 Sobic009G066900--Sobic002G134600 Sobic006G033200 Sobic006G033200 Sobic009G066900--Sobic006G033200 Sobic001G333600 Sobic001G333600 Sobic009G066900--Sobic001G333600 Sobic009G108700 Sobic009G108700 Sobic009G066900--Sobic009G108700 Sobic008G047400 Sobic008G047400 Sobic009G066900--Sobic008G047400 Sobic007G006900 Sobic007G006900 Sobic009G066900--Sobic007G006900 Sobic001G477700--Sobic006G131000 Sobic001G096000 Sobic001G096000 Sobic001G477700--Sobic001G096000 Sobic007G042900 Sobic007G042900 Sobic001G477700--Sobic007G042900 Sobic001G034500 Sobic001G034500 Sobic001G477700--Sobic001G034500 Sobic001G477700--Sobic007G196900 Sobic001G477700--Sobic007G180600 Sobic001G413800 Sobic001G413800 Sobic001G477700--Sobic001G413800 Sobic003G284000 Sobic003G284000 Sobic001G477700--Sobic003G284000 Sobic010G204400 Sobic010G204400 Sobic001G477700--Sobic010G204400 Sobic007G196900--Sobic001G477700 Sobic008G123500 Sobic008G123500 Sobic007G196900--Sobic008G123500 Sobic007G196900--Sobic001G095500 Sobic010G093100 Sobic010G093100 Sobic007G196900--Sobic010G093100 Sobic002G306000 Sobic002G306000 Sobic007G196900--Sobic002G306000 Sobic001G538700 Sobic001G538700 Sobic007G196900--Sobic001G538700 Sobic004G353600 Sobic004G353600 Sobic007G196900--Sobic004G353600 Sobic007G196900--Sobic001G251200 Sobic007G196900--Sobic001G096000 Sobic009G183101 Sobic009G183101 Sobic001G426800--Sobic009G183101 Sobic009G069300 Sobic009G069300 Sobic001G426800--Sobic009G069300 Sobic001G426800--Sobic003G339700 Sobic009G180500 Sobic009G180500 Sobic001G426800--Sobic009G180500 Sobic004G276200 Sobic004G276200 Sobic001G426800--Sobic004G276200 Sobic009G200800 Sobic009G200800 Sobic001G426800--Sobic009G200800 Sobic006G150400 Sobic006G150400 Sobic001G426800--Sobic006G150400 Sobic004G323400 Sobic004G323400 Sobic001G426800--Sobic004G323400 Sobic003G313900 Sobic003G313900 Sobic001G426800--Sobic003G313900
Octagon: transcription factors


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