Gene annotation
Transcriptome id Sobic.001G083800.2,Sobic.001G083800.4,Sobic.001G083800.3,Sobic.001G083800.5,Sobic.001G083800.1
Synonym ATCNGC2, CNGC2, DND1, Sb01g007550
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
cyclic nucleotide-gated ion channel 2, putative, expressed
UniProt A0A1Z5S574 , A0A1Z5S4T1 , A0A1B6QHW2 , C5X071 , A0A1Z5S4W5
Pfam PF00520
Panther DB PTHR10217 PTHR10217:SF501
NCBI CDD KOG0498; K+-channel ERG and related proteins, contain PAS/PAC sensor domain
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT5G15410 : Cyclic nucleotide-regulated ion channel family protein
RAP-DB (Rice) LOC_Os03g55100.1 : cyclic nucleotide-gated ion channel 2, putative, expressed
MaizeGDB (Corn) Zm00025a016769 , Zm00025a008228
Brachypodium KQK13100 , KQK13101
Barley HORVU5Hr1G096440.4 , HORVU5Hr1G096440.5 , HORVU5Hr1G096440.1 , HORVU5Hr1G096440.2 , HORVU5Hr1G096440.3
Wheat TraesCS5A02G395300 , TraesCS5A02G395300 , TraesCS7B02G161600 , TraesCS1A02G321700 , TraesCS5B02G400100 , TraesCS5B02G400100 , TraesCS5D02G404600 , TraesCS5D02G404600 , TraesCS3B02G306700
Populus -


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cDNA sequences
Sobic.001G083800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
2 Sobic.002G043500 aldehyde oxidase, putative, expressed K09842: abscisic-aldehyde oxidase
3 Sobic.003G149800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
4 Sobic.006G220300 - -
5 Sobic.001G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G031800 ZOS1-04 - C2H2 zinc finger protein, expressed -
7 Sobic.009G183000 - -
8 Sobic.001G095500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY121, expressed -
9 Sobic.003G298600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
10 Sobic.002G387200 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
11 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G110900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.005G209500 expressed protein -
14 Sobic.001G421900 SCARECROW, putative, expressed -
15 Sobic.003G278500 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
16 Sobic.009G066900 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
17 Sobic.009G108700 -(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
18 Sobic.007G196900 expressed protein -
19 Sobic.002G079801 - -
20 Sobic.002G134600 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G083800 Sobic001G083800 Sobic002G110300 Sobic002G110300 Sobic001G083800--Sobic002G110300 Sobic002G043500 Sobic002G043500 Sobic001G083800--Sobic002G043500 Sobic003G149800 Sobic003G149800 Sobic001G083800--Sobic003G149800 Sobic006G220300 Sobic006G220300 Sobic001G083800--Sobic006G220300 Sobic001G153200 Sobic001G153200 Sobic001G083800--Sobic001G153200 Sobic003G031800 Sobic003G031800 Sobic001G083800--Sobic003G031800 Sobic009G183000 Sobic009G183000 Sobic001G083800--Sobic009G183000 Sobic001G095500 Sobic001G095500 Sobic001G083800--Sobic001G095500 Sobic003G298600 Sobic003G298600 Sobic001G083800--Sobic003G298600 Sobic007G037301 Sobic007G037301 Sobic002G110300--Sobic007G037301 Sobic002G110300--Sobic001G095500 Sobic002G110300--Sobic009G183000 Sobic010G089100 Sobic010G089100 Sobic002G110300--Sobic010G089100 Sobic002G110300--Sobic001G083800 Sobic004G226600 Sobic004G226600 Sobic002G110300--Sobic004G226600 Sobic003G119800 Sobic003G119800 Sobic002G110300--Sobic003G119800 Sobic007G006900 Sobic007G006900 Sobic002G110300--Sobic007G006900 Sobic002G134600 Sobic002G134600 Sobic002G110300--Sobic002G134600 Sobic002G043500--Sobic002G110300 Sobic002G043500--Sobic001G083800 Sobic001G179900 Sobic001G179900 Sobic002G043500--Sobic001G179900 Sobic010G033700 Sobic010G033700 Sobic002G043500--Sobic010G033700 Sobic002G189700 Sobic002G189700 Sobic002G043500--Sobic002G189700 Sobic001G333900 Sobic001G333900 Sobic002G043500--Sobic001G333900 Sobic002G009900 Sobic002G009900 Sobic002G043500--Sobic002G009900 Sobic007G196900 Sobic007G196900 Sobic002G043500--Sobic007G196900 Sobic004G305200 Sobic004G305200 Sobic002G043500--Sobic004G305200 Sobic006G068350 Sobic006G068350 Sobic003G149800--Sobic006G068350 Sobic003G149800--Sobic001G083800 Sobic003G149800--Sobic003G298600 Sobic009G099200 Sobic009G099200 Sobic003G149800--Sobic009G099200 Sobic004G124500 Sobic004G124500 Sobic003G149800--Sobic004G124500 Sobic009G066900 Sobic009G066900 Sobic003G149800--Sobic009G066900 Sobic001G477700 Sobic001G477700 Sobic003G149800--Sobic001G477700 Sobic003G149800--Sobic007G196900 Sobic001G426800 Sobic001G426800 Sobic003G149800--Sobic001G426800 Sobic006G220200 Sobic006G220200 Sobic006G220300--Sobic006G220200 Sobic001G110900 Sobic001G110900 Sobic006G220300--Sobic001G110900 Sobic009G155700 Sobic009G155700 Sobic006G220300--Sobic009G155700 Sobic002G216400 Sobic002G216400 Sobic006G220300--Sobic002G216400 Sobic001G087700 Sobic001G087700 Sobic006G220300--Sobic001G087700 Sobic004G332100 Sobic004G332100 Sobic006G220300--Sobic004G332100 Sobic001G470900 Sobic001G470900 Sobic006G220300--Sobic001G470900 Sobic001G045600 Sobic001G045600 Sobic006G220300--Sobic001G045600 Sobic010G260300 Sobic010G260300 Sobic006G220300--Sobic010G260300 Sobic002G394400 Sobic002G394400 Sobic001G153200--Sobic002G394400 Sobic003G034700 Sobic003G034700 Sobic001G153200--Sobic003G034700 Sobic002G215100 Sobic002G215100 Sobic001G153200--Sobic002G215100 Sobic001G421300 Sobic001G421300 Sobic001G153200--Sobic001G421300 Sobic010G193300 Sobic010G193300 Sobic001G153200--Sobic010G193300 Sobic001G472600 Sobic001G472600 Sobic001G153200--Sobic001G472600 Sobic004G146800 Sobic004G146800 Sobic001G153200--Sobic004G146800 Sobic003G269200 Sobic003G269200 Sobic001G153200--Sobic003G269200 Sobic001G463000 Sobic001G463000 Sobic001G153200--Sobic001G463000 Sobic003G372800 Sobic003G372800 Sobic003G031800--Sobic003G372800 Sobic003G031800--Sobic006G220300 Sobic003G031800--Sobic010G260300 Sobic004G257350 Sobic004G257350 Sobic003G031800--Sobic004G257350 Sobic003G031800--Sobic002G110300 Sobic003G031800--Sobic002G134600 Sobic001G127200 Sobic001G127200 Sobic003G031800--Sobic001G127200 Sobic010G072500 Sobic010G072500 Sobic003G031800--Sobic010G072500 Sobic005G209500 Sobic005G209500 Sobic003G031800--Sobic005G209500 Sobic009G183000--Sobic010G260300 Sobic002G079801 Sobic002G079801 Sobic009G183000--Sobic002G079801 Sobic003G198150 Sobic003G198150 Sobic009G183000--Sobic003G198150 Sobic009G183000--Sobic002G110300 Sobic008G044750 Sobic008G044750 Sobic009G183000--Sobic008G044750 Sobic009G128300 Sobic009G128300 Sobic009G183000--Sobic009G128300 Sobic008G031300 Sobic008G031300 Sobic009G183000--Sobic008G031300 Sobic009G183000--Sobic001G095500 Sobic007G025800 Sobic007G025800 Sobic009G183000--Sobic007G025800 Sobic001G095500--Sobic002G110300 Sobic001G251200 Sobic001G251200 Sobic001G095500--Sobic001G251200 Sobic001G095500--Sobic007G196900 Sobic001G538700 Sobic001G538700 Sobic001G095500--Sobic001G538700 Sobic001G095500--Sobic009G183000 Sobic007G047700 Sobic007G047700 Sobic001G095500--Sobic007G047700 Sobic001G037150 Sobic001G037150 Sobic001G095500--Sobic001G037150 Sobic006G251000 Sobic006G251000 Sobic001G095500--Sobic006G251000 Sobic001G521500 Sobic001G521500 Sobic001G095500--Sobic001G521500 Sobic005G087900 Sobic005G087900 Sobic003G298600--Sobic005G087900 Sobic003G339700 Sobic003G339700 Sobic003G298600--Sobic003G339700 Sobic007G146400 Sobic007G146400 Sobic003G298600--Sobic007G146400 Sobic002G211800 Sobic002G211800 Sobic003G298600--Sobic002G211800 Sobic003G362600 Sobic003G362600 Sobic003G298600--Sobic003G362600 Sobic003G298600--Sobic009G066900 Sobic010G186700 Sobic010G186700 Sobic003G298600--Sobic010G186700 Sobic003G298600--Sobic001G251200 Sobic003G298600--Sobic002G110300
Octagon: transcription factors


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