Gene annotation
Transcriptome id Sobic.003G278500.8,Sobic.003G278500.3,Sobic.003G278500.6,Sobic.003G278500.7,Sobic.003G278500.4,Sobic.003G278500.5,Sobic.003G278500.1,Sobic.003G278500.2
Synonym Sb03g033040
Functional annotation RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
UniProt A0A1B6Q5R6 , A0A1B6Q5R4 , A0A1B6Q5R2
Pfam PF13639 PF14599 PF05495 PF05495
Panther DB PTHR21319 PTHR21319:SF15
NCBI CDD KOG1940; Zn-finger protein
KEGG Orthology K10144; RCHY1, RING finger and CHY zinc finger domain-containing protein 1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G25560 : CHY-type/CTCHY-type/RING-type Zinc finger protein
RAP-DB (Rice) LOC_Os01g52110.3,LOC_Os01g52110.5,LOC_Os01g52110.4,LOC_Os01g52110.1 : RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a027753
Brachypodium PNT72724 , PNT72723 , PNT72721 , KQK09499 , KQK09495 , KQK09497 , KQK09496 , KQK09498 , PNT72722 , KQK09501 , KQK09500
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G186900 PP2A regulatory subunit TAP46, putative, expressed -
2 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
4 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
5 Sobic.001G152280 - -
6 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
7 Sobic.007G167500 expressed protein -
8 Sobic.003G056100 transcription initiation factor, putative, expressed K03129: transcription initiation factor TFIID subunit 4
9 Sobic.010G097600 OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed -
10 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
11 Sobic.001G205200 expressed protein -
12 Sobic.009G056500 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.001G497300 protein kinase domain containing protein, expressed -
14 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
15 Sobic.003G087400 - -
16 Sobic.004G267300 bg55, putative, expressed -
17 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
18 Sobic.007G008900 SAC domain containing protein, putative, expressed -
19 Sobic.007G104800 expressed protein -
20 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G278500 Sobic003G278500 Sobic007G186900 Sobic007G186900 Sobic003G278500--Sobic007G186900 Sobic003G029700 Sobic003G029700 Sobic003G278500--Sobic003G029700 Sobic010G101800 Sobic010G101800 Sobic003G278500--Sobic010G101800 Sobic003G397800 Sobic003G397800 Sobic003G278500--Sobic003G397800 Sobic001G152280 Sobic001G152280 Sobic003G278500--Sobic001G152280 Sobic007G217000 Sobic007G217000 Sobic003G278500--Sobic007G217000 Sobic007G167500 Sobic007G167500 Sobic003G278500--Sobic007G167500 Sobic003G056100 Sobic003G056100 Sobic003G278500--Sobic003G056100 Sobic010G097600 Sobic010G097600 Sobic003G278500--Sobic010G097600 Sobic010G028800 Sobic010G028800 Sobic007G186900--Sobic010G028800 Sobic006G142775 Sobic006G142775 Sobic007G186900--Sobic006G142775 Sobic010G056000 Sobic010G056000 Sobic007G186900--Sobic010G056000 Sobic007G186900--Sobic003G278500 Sobic007G186900--Sobic010G101800 Sobic001G191600 Sobic001G191600 Sobic007G186900--Sobic001G191600 Sobic001G451400 Sobic001G451400 Sobic007G186900--Sobic001G451400 Sobic007G186900--Sobic003G029700 Sobic001G205200 Sobic001G205200 Sobic007G186900--Sobic001G205200 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic008G047800 Sobic008G047800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic003G029700--Sobic009G191000 Sobic003G029700--Sobic001G205200 Sobic002G297200 Sobic002G297200 Sobic010G101800--Sobic002G297200 Sobic001G155000 Sobic001G155000 Sobic010G101800--Sobic001G155000 Sobic010G101800--Sobic007G167500 Sobic010G101800--Sobic010G028800 Sobic010G101800--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic010G101800--Sobic001G409600 Sobic002G310200 Sobic002G310200 Sobic010G101800--Sobic002G310200 Sobic010G053800 Sobic010G053800 Sobic010G101800--Sobic010G053800 Sobic002G309600 Sobic002G309600 Sobic010G101800--Sobic002G309600 Sobic003G397800--Sobic002G297200 Sobic003G397800--Sobic001G409600 Sobic002G353600 Sobic002G353600 Sobic003G397800--Sobic002G353600 Sobic003G397800--Sobic007G167500 Sobic003G445400 Sobic003G445400 Sobic003G397800--Sobic003G445400 Sobic001G206100 Sobic001G206100 Sobic003G397800--Sobic001G206100 Sobic007G185900 Sobic007G185900 Sobic003G397800--Sobic007G185900 Sobic003G397800--Sobic010G101800 Sobic008G054500 Sobic008G054500 Sobic003G397800--Sobic008G054500 Sobic001G220300 Sobic001G220300 Sobic001G152280--Sobic001G220300 Sobic009G042700 Sobic009G042700 Sobic001G152280--Sobic009G042700 Sobic001G152280--Sobic010G053800 Sobic001G152280--Sobic010G101800 Sobic007G207000 Sobic007G207000 Sobic001G152280--Sobic007G207000 Sobic001G152280--Sobic003G278500 Sobic001G152280--Sobic007G186900 Sobic002G315200 Sobic002G315200 Sobic001G152280--Sobic002G315200 Sobic001G152280--Sobic001G155000 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic003G119000 Sobic003G119000 Sobic007G167500--Sobic003G119000 Sobic007G167500--Sobic002G006900 Sobic007G167500--Sobic003G397800 Sobic007G096600 Sobic007G096600 Sobic007G167500--Sobic007G096600 Sobic007G167500--Sobic010G101800 Sobic007G065400 Sobic007G065400 Sobic007G167500--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic007G167500--Sobic009G210500 Sobic003G332800 Sobic003G332800 Sobic007G167500--Sobic003G332800 Sobic003G372700 Sobic003G372700 Sobic007G167500--Sobic003G372700 Sobic001G125200 Sobic001G125200 Sobic003G056100--Sobic001G125200 Sobic003G056100--Sobic002G006900 Sobic008G067600 Sobic008G067600 Sobic003G056100--Sobic008G067600 Sobic001G512700 Sobic001G512700 Sobic003G056100--Sobic001G512700 Sobic003G056100--Sobic001G497300 Sobic003G056100--Sobic002G315200 Sobic009G104201 Sobic009G104201 Sobic003G056100--Sobic009G104201 Sobic003G087400 Sobic003G087400 Sobic003G056100--Sobic003G087400 Sobic003G056100--Sobic007G217000 Sobic006G048600 Sobic006G048600 Sobic010G097600--Sobic006G048600 Sobic010G097600--Sobic010G013800 Sobic008G188900 Sobic008G188900 Sobic010G097600--Sobic008G188900 Sobic008G151100 Sobic008G151100 Sobic010G097600--Sobic008G151100 Sobic010G097600--Sobic001G205200 Sobic010G097600--Sobic004G341900 Sobic001G486300 Sobic001G486300 Sobic010G097600--Sobic001G486300 Sobic005G023900 Sobic005G023900 Sobic010G097600--Sobic005G023900 Sobic005G045000 Sobic005G045000 Sobic010G097600--Sobic005G045000
Octagon: transcription factors


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