Gene annotation
Transcriptome id Sobic.009G108700.2,Sobic.009G108700.1
Synonym NADP-ME4;NADP-ME2/3/4, ATNADP-ME4, NADP-ME4
Functional annotation - (PubMedID : 26976818)
NADP-dependent malic enzyme (PubMedID : 27016024)
NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
UniProt I3XN00 , A0A1B6P7V2 , A0A1Z5R378
Pfam PF00390 PF03949
Panther DB PTHR23406 PTHR23406:SF29
NCBI CDD -
KEGG Orthology K00029; E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
Gene Ontology GO:0004471; malate dehydrogenase (decarboxylating) (NAD+) activity


Orthologs (automatic annotation)
TAIR AT1G79750 : NADP-malic enzyme 4
RAP-DB (Rice) LOC_Os01g09320.1 : NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a027741 , Zm00025a023064 , Zm00025a043399 , Zm00025a043397
Brachypodium KQK03103 , KQK03102
Barley HORVU1Hr1G028030.30 , HORVU1Hr1G028030.8 , HORVU3Hr1G019790.9 , HORVU3Hr1G019790.7 , HORVU3Hr1G019790.6 , HORVU3Hr1G019790.5 , HORVU3Hr1G019790.4 , HORVU3Hr1G019790.3 , HORVU3Hr1G019790.2 , HORVU3Hr1G019790.1 , HORVU1Hr1G028030.3 , HORVU1Hr1G028030.4 , HORVU1Hr1G028030.5 , HORVU1Hr1G028030.6 , HORVU1Hr1G028030.7 , HORVU3Hr1G019790.19 , HORVU3Hr1G019790.18 , HORVU3Hr1G019790.17 , HORVU3Hr1G019790.16 , HORVU3Hr1G019790.15 , HORVU3Hr1G019790.14 , HORVU3Hr1G019790.13 , HORVU3Hr1G019790.12 , HORVU3Hr1G019790.11 , HORVU3Hr1G019790.10 , HORVU3Hr1G019790.8 , HORVU1Hr1G028030.13 , HORVU1Hr1G028030.16 , HORVU1Hr1G028030.17 , HORVU1Hr1G028030.14 , HORVU1Hr1G028030.15 , HORVU1Hr1G028030.18 , HORVU1Hr1G028030.19 , HORVU1Hr1G028030.22 , HORVU3Hr1G019790.20 , HORVU3Hr1G019790.21 , HORVU1Hr1G028030.29 , HORVU1Hr1G028030.28 , HORVU1Hr1G028030.23 , HORVU1Hr1G028030.21 , HORVU1Hr1G028030.20 , HORVU1Hr1G028030.27 , HORVU1Hr1G028030.26 , HORVU1Hr1G028030.25
Wheat TraesCS3D02G110700 , TraesCS3D02G110700 , TraesCS3B02G128000 , TraesCS3B02G128000 , TraesCS3A02G108900 , TraesCS3A02G108900
Populus PNT55387 , PNT55389 , PNT55388 , PNT33378 , PNT33377 , PNT55390 , PNT55391 , PNT55392


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cDNA sequences
Sobic.009G108700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G066900 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
2 Sobic.001G154500 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
3 Sobic.004G226600 expressed protein -
4 Sobic.003G033700 expressed protein K15326: tRNA-splicing endonuclease subunit Sen54
5 Sobic.002G306000 calmodulin-binding transcription activator 5, putative, expressed -
6 Sobic.002G257200 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
7 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
8 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
9 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
10 Sobic.002G043500 aldehyde oxidase, putative, expressed K09842: abscisic-aldehyde oxidase
11 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
12 Sobic.007G046000 OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed K10878: meiotic recombination protein SPO11
13 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
14 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
15 Sobic.001G118700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed -
16 Sobic.010G220500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, putative, expressed K02083: allantoate deiminase
17 Sobic.010G147600 reticulon domain containing protein, putative, expressed -
18 Sobic.001G486000 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
19 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
20 Sobic.003G298600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -


Gene co-expression network
sample Sobic009G108700 Sobic009G108700 Sobic009G066900 Sobic009G066900 Sobic009G108700--Sobic009G066900 Sobic001G154500 Sobic001G154500 Sobic009G108700--Sobic001G154500 Sobic004G226600 Sobic004G226600 Sobic009G108700--Sobic004G226600 Sobic003G033700 Sobic003G033700 Sobic009G108700--Sobic003G033700 Sobic002G306000 Sobic002G306000 Sobic009G108700--Sobic002G306000 Sobic002G257200 Sobic002G257200 Sobic009G108700--Sobic002G257200 Sobic001G333900 Sobic001G333900 Sobic009G108700--Sobic001G333900 Sobic002G110300 Sobic002G110300 Sobic009G108700--Sobic002G110300 Sobic001G425800 Sobic001G425800 Sobic009G108700--Sobic001G425800 Sobic003G309200 Sobic003G309200 Sobic009G066900--Sobic003G309200 Sobic008G124900 Sobic008G124900 Sobic009G066900--Sobic008G124900 Sobic003G119700 Sobic003G119700 Sobic009G066900--Sobic003G119700 Sobic002G134600 Sobic002G134600 Sobic009G066900--Sobic002G134600 Sobic006G033200 Sobic006G033200 Sobic009G066900--Sobic006G033200 Sobic001G333600 Sobic001G333600 Sobic009G066900--Sobic001G333600 Sobic009G066900--Sobic009G108700 Sobic008G047400 Sobic008G047400 Sobic009G066900--Sobic008G047400 Sobic007G006900 Sobic007G006900 Sobic009G066900--Sobic007G006900 Sobic001G154500--Sobic001G425800 Sobic001G154500--Sobic002G134600 Sobic001G154500--Sobic007G006900 Sobic010G076300 Sobic010G076300 Sobic001G154500--Sobic010G076300 Sobic010G223700 Sobic010G223700 Sobic001G154500--Sobic010G223700 Sobic001G226700 Sobic001G226700 Sobic001G154500--Sobic001G226700 Sobic001G154500--Sobic003G309200 Sobic010G068500 Sobic010G068500 Sobic001G154500--Sobic010G068500 Sobic001G154500--Sobic002G110300 Sobic004G286500 Sobic004G286500 Sobic004G226600--Sobic004G286500 Sobic010G249100 Sobic010G249100 Sobic004G226600--Sobic010G249100 Sobic003G273500 Sobic003G273500 Sobic004G226600--Sobic003G273500 Sobic003G187200 Sobic003G187200 Sobic004G226600--Sobic003G187200 Sobic007G118200 Sobic007G118200 Sobic004G226600--Sobic007G118200 Sobic003G289400 Sobic003G289400 Sobic004G226600--Sobic003G289400 Sobic010G204400 Sobic010G204400 Sobic004G226600--Sobic010G204400 Sobic004G226600--Sobic001G425800 Sobic006G163800 Sobic006G163800 Sobic004G226600--Sobic006G163800 Sobic004G353600 Sobic004G353600 Sobic003G033700--Sobic004G353600 Sobic010G071700 Sobic010G071700 Sobic003G033700--Sobic010G071700 Sobic007G216500 Sobic007G216500 Sobic003G033700--Sobic007G216500 Sobic002G185300 Sobic002G185300 Sobic003G033700--Sobic002G185300 Sobic003G033700--Sobic009G108700 Sobic008G058700 Sobic008G058700 Sobic003G033700--Sobic008G058700 Sobic001G471000 Sobic001G471000 Sobic003G033700--Sobic001G471000 Sobic007G178200 Sobic007G178200 Sobic003G033700--Sobic007G178200 Sobic009G161900 Sobic009G161900 Sobic003G033700--Sobic009G161900 Sobic002G306000--Sobic004G353600 Sobic003G272400 Sobic003G272400 Sobic002G306000--Sobic003G272400 Sobic003G281900 Sobic003G281900 Sobic002G306000--Sobic003G281900 Sobic003G407200 Sobic003G407200 Sobic002G306000--Sobic003G407200 Sobic007G196900 Sobic007G196900 Sobic002G306000--Sobic007G196900 Sobic010G140500 Sobic010G140500 Sobic002G306000--Sobic010G140500 Sobic001G015800 Sobic001G015800 Sobic002G306000--Sobic001G015800 Sobic001G096000 Sobic001G096000 Sobic002G306000--Sobic001G096000 Sobic009G219000 Sobic009G219000 Sobic002G306000--Sobic009G219000 Sobic002G257200--Sobic001G425800 Sobic005G158300 Sobic005G158300 Sobic002G257200--Sobic005G158300 Sobic002G257200--Sobic004G226600 Sobic003G316700 Sobic003G316700 Sobic002G257200--Sobic003G316700 Sobic010G009800 Sobic010G009800 Sobic002G257200--Sobic010G009800 Sobic004G316700 Sobic004G316700 Sobic002G257200--Sobic004G316700 Sobic004G325600 Sobic004G325600 Sobic002G257200--Sobic004G325600 Sobic002G257200--Sobic004G286500 Sobic002G257200--Sobic003G273500 Sobic001G333900--Sobic009G161900 Sobic002G043500 Sobic002G043500 Sobic001G333900--Sobic002G043500 Sobic001G333900--Sobic009G108700 Sobic001G333900--Sobic007G196900 Sobic003G149800 Sobic003G149800 Sobic001G333900--Sobic003G149800 Sobic003G198200 Sobic003G198200 Sobic001G333900--Sobic003G198200 Sobic006G206800 Sobic006G206800 Sobic001G333900--Sobic006G206800 Sobic001G477700 Sobic001G477700 Sobic001G333900--Sobic001G477700 Sobic010G011900 Sobic010G011900 Sobic001G333900--Sobic010G011900 Sobic007G037301 Sobic007G037301 Sobic002G110300--Sobic007G037301 Sobic001G095500 Sobic001G095500 Sobic002G110300--Sobic001G095500 Sobic009G183000 Sobic009G183000 Sobic002G110300--Sobic009G183000 Sobic010G089100 Sobic010G089100 Sobic002G110300--Sobic010G089100 Sobic001G083800 Sobic001G083800 Sobic002G110300--Sobic001G083800 Sobic002G110300--Sobic004G226600 Sobic003G119800 Sobic003G119800 Sobic002G110300--Sobic003G119800 Sobic002G110300--Sobic007G006900 Sobic002G110300--Sobic002G134600 Sobic001G425800--Sobic002G134600 Sobic001G425800--Sobic010G223700 Sobic001G425800--Sobic007G006900 Sobic008G046500 Sobic008G046500 Sobic001G425800--Sobic008G046500 Sobic001G425800--Sobic010G249100 Sobic001G425800--Sobic001G226700 Sobic001G425800--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic001G425800--Sobic004G146800 Sobic001G425800--Sobic008G124900
Octagon: transcription factors


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