Gene annotation
Transcriptome id Sobic.009G161900.1,Sobic.009G161900.2
Synonym Sb09g022420, NDP1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
NDP1, putative, expressed
UniProt C5YZ83 , A0A1Z5R2Z4
Pfam PF13374
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g38330.1 : NDP1, putative, expressed
MaizeGDB (Corn) Zm00025a037679
Brachypodium KQK05932
Barley HORVU1Hr1G072640.12 , HORVU1Hr1G072640.13 , HORVU1Hr1G072640.10 , HORVU1Hr1G072640.11 , HORVU1Hr1G072640.16 , HORVU1Hr1G072640.14 , HORVU1Hr1G072640.15 , HORVU1Hr1G072640.8 , HORVU1Hr1G072640.9 , HORVU1Hr1G072640.1 , HORVU1Hr1G072640.2 , HORVU1Hr1G072640.3 , HORVU1Hr1G072640.4 , HORVU1Hr1G072640.5 , HORVU1Hr1G072640.6 , HORVU1Hr1G072640.7
Wheat TraesCS1D02G282200 , TraesCS1B02G291900 , TraesCS1B02G291900 , TraesCS1A02G283000 , TraesCS1A02G283000
Populus -


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cDNA sequences
Sobic.009G161900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G147600 reticulon domain containing protein, putative, expressed -
2 Sobic.004G058600 aldehyde dehydrogenase, putative, expressed K17761: succinate-semialdehyde dehydrogenase, mitochondrial
3 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
4 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
5 Sobic.001G193500 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
6 Sobic.004G066500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
7 Sobic.001G424400 similar to Putative uncharacterized protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
8 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
9 Sobic.010G170000 Triacylglycerol biosynthesis defect 1(PubMedID : 26320239)@O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
10 Sobic.001G118700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed -
11 Sobic.003G033700 expressed protein K15326: tRNA-splicing endonuclease subunit Sen54
12 Sobic.008G088839 - -
13 Sobic.010G011900 expressed protein -
14 Sobic.003G075400 expressed protein K07466: RFA1, RPA1, replication factor A1
15 Sobic.009G108700 -(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
16 Sobic.003G408300 WD domain, G-beta repeat domain containing protein, expressed K14791: periodic tryptophan protein 1
17 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
18 Sobic.008G116600 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed -
19 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
20 Sobic.010G169300 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon


Gene co-expression network
sample Sobic009G161900 Sobic009G161900 Sobic010G147600 Sobic010G147600 Sobic009G161900--Sobic010G147600 Sobic004G058600 Sobic004G058600 Sobic009G161900--Sobic004G058600 Sobic001G471000 Sobic001G471000 Sobic009G161900--Sobic001G471000 Sobic001G333900 Sobic001G333900 Sobic009G161900--Sobic001G333900 Sobic001G193500 Sobic001G193500 Sobic009G161900--Sobic001G193500 Sobic004G066500 Sobic004G066500 Sobic009G161900--Sobic004G066500 Sobic001G424400 Sobic001G424400 Sobic009G161900--Sobic001G424400 Sobic003G378000 Sobic003G378000 Sobic009G161900--Sobic003G378000 Sobic010G170000 Sobic010G170000 Sobic009G161900--Sobic010G170000 Sobic010G147600--Sobic009G161900 Sobic010G147600--Sobic001G424400 Sobic002G043500 Sobic002G043500 Sobic010G147600--Sobic002G043500 Sobic001G477700 Sobic001G477700 Sobic010G147600--Sobic001G477700 Sobic009G108700 Sobic009G108700 Sobic010G147600--Sobic009G108700 Sobic002G072600 Sobic002G072600 Sobic010G147600--Sobic002G072600 Sobic003G408300 Sobic003G408300 Sobic010G147600--Sobic003G408300 Sobic001G179900 Sobic001G179900 Sobic010G147600--Sobic001G179900 Sobic001G118700 Sobic001G118700 Sobic010G147600--Sobic001G118700 Sobic003G011000 Sobic003G011000 Sobic004G058600--Sobic003G011000 Sobic010G024600 Sobic010G024600 Sobic004G058600--Sobic010G024600 Sobic001G508200 Sobic001G508200 Sobic004G058600--Sobic001G508200 Sobic004G058600--Sobic004G066500 Sobic004G033200 Sobic004G033200 Sobic004G058600--Sobic004G033200 Sobic006G034300 Sobic006G034300 Sobic004G058600--Sobic006G034300 Sobic003G427300 Sobic003G427300 Sobic004G058600--Sobic003G427300 Sobic004G058600--Sobic009G161900 Sobic001G460100 Sobic001G460100 Sobic004G058600--Sobic001G460100 Sobic007G112600 Sobic007G112600 Sobic001G471000--Sobic007G112600 Sobic010G235200 Sobic010G235200 Sobic001G471000--Sobic010G235200 Sobic006G142400 Sobic006G142400 Sobic001G471000--Sobic006G142400 Sobic007G042900 Sobic007G042900 Sobic001G471000--Sobic007G042900 Sobic004G068500 Sobic004G068500 Sobic001G471000--Sobic004G068500 Sobic005G155100 Sobic005G155100 Sobic001G471000--Sobic005G155100 Sobic007G077400 Sobic007G077400 Sobic001G471000--Sobic007G077400 Sobic001G471000--Sobic001G477700 Sobic007G162800 Sobic007G162800 Sobic001G471000--Sobic007G162800 Sobic001G333900--Sobic009G161900 Sobic001G333900--Sobic002G043500 Sobic001G333900--Sobic009G108700 Sobic007G196900 Sobic007G196900 Sobic001G333900--Sobic007G196900 Sobic003G149800 Sobic003G149800 Sobic001G333900--Sobic003G149800 Sobic003G198200 Sobic003G198200 Sobic001G333900--Sobic003G198200 Sobic006G206800 Sobic006G206800 Sobic001G333900--Sobic006G206800 Sobic001G333900--Sobic001G477700 Sobic010G011900 Sobic010G011900 Sobic001G333900--Sobic010G011900 Sobic010G169300 Sobic010G169300 Sobic001G193500--Sobic010G169300 Sobic002G116500 Sobic002G116500 Sobic001G193500--Sobic002G116500 Sobic002G014400 Sobic002G014400 Sobic001G193500--Sobic002G014400 Sobic007G177300 Sobic007G177300 Sobic001G193500--Sobic007G177300 Sobic008G016100 Sobic008G016100 Sobic001G193500--Sobic008G016100 Sobic001G193500--Sobic001G471000 Sobic001G467100 Sobic001G467100 Sobic001G193500--Sobic001G467100 Sobic009G077600 Sobic009G077600 Sobic001G193500--Sobic009G077600 Sobic005G163700 Sobic005G163700 Sobic001G193500--Sobic005G163700 Sobic008G191850 Sobic008G191850 Sobic004G066500--Sobic008G191850 Sobic007G053100 Sobic007G053100 Sobic004G066500--Sobic007G053100 Sobic004G066500--Sobic004G033200 Sobic004G066500--Sobic003G427300 Sobic004G066500--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic004G066500--Sobic003G098300 Sobic002G266300 Sobic002G266300 Sobic004G066500--Sobic002G266300 Sobic001G044300 Sobic001G044300 Sobic004G066500--Sobic001G044300 Sobic004G066500--Sobic001G508200 Sobic004G116300 Sobic004G116300 Sobic001G424400--Sobic004G116300 Sobic001G424400--Sobic010G011900 Sobic001G424400--Sobic009G161900 Sobic001G424400--Sobic010G147600 Sobic003G281800 Sobic003G281800 Sobic001G424400--Sobic003G281800 Sobic001G155300 Sobic001G155300 Sobic001G424400--Sobic001G155300 Sobic001G424400--Sobic003G378000 Sobic001G241600 Sobic001G241600 Sobic001G424400--Sobic001G241600 Sobic003G354000 Sobic003G354000 Sobic001G424400--Sobic003G354000 Sobic003G378000--Sobic001G155300 Sobic004G170032 Sobic004G170032 Sobic003G378000--Sobic004G170032 Sobic002G110200 Sobic002G110200 Sobic003G378000--Sobic002G110200 Sobic004G353600 Sobic004G353600 Sobic003G378000--Sobic004G353600 Sobic006G078350 Sobic006G078350 Sobic003G378000--Sobic006G078350 Sobic007G143200 Sobic007G143200 Sobic003G378000--Sobic007G143200 Sobic002G023900 Sobic002G023900 Sobic003G378000--Sobic002G023900 Sobic007G143100 Sobic007G143100 Sobic003G378000--Sobic007G143100 Sobic007G169600 Sobic007G169600 Sobic003G378000--Sobic007G169600 Sobic010G170000--Sobic003G427300 Sobic010G170000--Sobic004G066500 Sobic010G170000--Sobic007G053100 Sobic010G077300 Sobic010G077300 Sobic010G170000--Sobic010G077300 Sobic006G251500 Sobic006G251500 Sobic010G170000--Sobic006G251500 Sobic003G224600 Sobic003G224600 Sobic010G170000--Sobic003G224600 Sobic010G170000--Sobic008G191850 Sobic005G045700 Sobic005G045700 Sobic010G170000--Sobic005G045700 Sobic010G170000--Sobic002G266300
Octagon: transcription factors


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