Gene annotation
| Transcriptome id | Sobic.001G424400.2,Sobic.001G424400.1 |
|---|---|
| Synonym | Type 2C protein phosphate, Sb01g039890, PP2C, HAI2 |
| Functional annotation | similar to Putative uncharacterized protein (PubMedID : 29862293) "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) Up-reguralion under drought (PubMedID : 24916767) Negative regulator of ABA (PubMedID : 30367619) protein phosphatase 2C, putative, expressed |
| UniProt | C5WQ29 |
| Pfam | PF00481 |
| Panther DB | PTHR13832 PTHR13832:SF219 |
| NCBI CDD | KOG0698; Serine/threonine protein phosphatase |
| KEGG Orthology | K14497; protein phosphatase 2C |
| Gene Ontology | GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity |
Orthologs (automatic annotation)
| TAIR | AT1G07430 : highly ABA-induced PP2C gene 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g16170.1 : protein phosphatase 2C, putative, expressed |
| MaizeGDB (Corn) | Zm00025a012428 , Zm00025a001791 , Zm00025a055673 |
| Brachypodium | KQK04770 , KQK22386 , KQK04583 , KQK09009 |
| Barley | HORVU4Hr1G060370.6 , HORVU4Hr1G060370.4 , HORVU4Hr1G060370.5 , HORVU4Hr1G060370.2 , HORVU4Hr1G060370.3 , HORVU4Hr1G060370.1 , HORVU7Hr1G008520.2 , HORVU3Hr1G085930.2 , HORVU3Hr1G085930.3 , HORVU3Hr1G085930.1 , HORVU3Hr1G085930.6 , HORVU3Hr1G085930.4 , HORVU3Hr1G085930.5 , HORVU7Hr1G008560.2 , HORVU7Hr1G008550.1 , HORVU7Hr1G008560.1 , HORVU2Hr1G000090.4 , HORVU2Hr1G000090.2 , HORVU2Hr1G000090.1 , HORVU2Hr1G000090.6 , HORVU2Hr1G000090.3 |
| Wheat | TraesCS4B02G210100 , TraesCS4D02G210900 , TraesCS3D02G355900 , TraesCS3B02G394600 , TraesCS3B02G394600 , TraesCS3A02G362200 , TraesCS4A02G094300 |
| Populus | - |
JBrowse
| Sobic.001G424400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G116300 | expressed protein | - |
| 2 | Sobic.010G011900 | expressed protein | - |
| 3 | Sobic.009G161900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed | - |
| 4 | Sobic.010G147600 | reticulon domain containing protein, putative, expressed | - |
| 5 | Sobic.003G281800 | membrane associated DUF588 domain containing protein, putative, expressed | - |
| 6 | Sobic.001G155300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed | K09840: 9-cis-epoxycarotenoid dioxygenase |
| 7 | Sobic.003G378000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed | K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) |
| 8 | Sobic.001G241600 | MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 9 | Sobic.003G354000 | similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 10 | Sobic.008G029300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 11 | Sobic.004G058600 | aldehyde dehydrogenase, putative, expressed | K17761: succinate-semialdehyde dehydrogenase, mitochondrial |
| 12 | Sobic.008G087500 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 13 | Sobic.003G064300 | - | - |
| 14 | Sobic.003G081900 | hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 15 | Sobic.003G198200 | "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 16 | Sobic.002G207100 | - | - |
| 17 | Sobic.010G231900 | early nodulin 20 precursor, putative, expressed | - |
| 18 | Sobic.009G161800 | protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 19 | Sobic.002G075800 | Up-reguralion under drought(PubMedID : 24916767)@uncharacterized glycosyltransferase, putative, expressed | K06617: raffinose synthase |
| 20 | Sobic.004G142500 | Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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