Gene annotation
Transcriptome id Sobic.003G281800.1
Synonym
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt A0A1B6Q5U8 , C5XIF2
Pfam PF01284
Panther DB PTHR11615 PTHR11615:SF118
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G79780 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os01g52610.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS3A02G284900 , TraesCS3D02G284700
Populus -


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cDNA sequences
Sobic.003G281800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@anthranilate phosphoribosyltransferase, putative, expressed -
2 Sobic.002G239900 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
3 Sobic.008G119400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
4 Sobic.001G424400 similar to Putative uncharacterized protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
5 Sobic.001G241600 MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.006G206800 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
7 Sobic.004G146300 AP003256-AK101847 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed -
8 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
9 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
10 Sobic.003G095800 phosphatidylserine synthase, putative, expressed K08730: phosphatidylserine synthase 2
11 Sobic.003G075400 expressed protein K07466: RFA1, RPA1, replication factor A1
12 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
13 Sobic.004G180500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
14 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
15 Sobic.003G306900 deoxycytidylate deaminase, putative, expressed K01493: dCMP deaminase
16 Sobic.010G079100 lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed -
17 Sobic.001G404700 protein kinase, putative, expressed -
18 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
19 Sobic.003G354000 similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
20 Sobic.009G167900 CAMK_CAMK_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic003G281800 Sobic003G281800 Sobic004G343800 Sobic004G343800 Sobic003G281800--Sobic004G343800 Sobic002G239900 Sobic002G239900 Sobic003G281800--Sobic002G239900 Sobic008G119400 Sobic008G119400 Sobic003G281800--Sobic008G119400 Sobic001G424400 Sobic001G424400 Sobic003G281800--Sobic001G424400 Sobic001G241600 Sobic001G241600 Sobic003G281800--Sobic001G241600 Sobic006G206800 Sobic006G206800 Sobic003G281800--Sobic006G206800 Sobic004G146300 Sobic004G146300 Sobic003G281800--Sobic004G146300 Sobic010G186500 Sobic010G186500 Sobic003G281800--Sobic010G186500 Sobic009G161900 Sobic009G161900 Sobic003G281800--Sobic009G161900 Sobic004G343800--Sobic003G281800 Sobic004G309800 Sobic004G309800 Sobic004G343800--Sobic004G309800 Sobic001G219400 Sobic001G219400 Sobic004G343800--Sobic001G219400 Sobic010G175000 Sobic010G175000 Sobic004G343800--Sobic010G175000 Sobic004G343800--Sobic008G119400 Sobic007G187400 Sobic007G187400 Sobic004G343800--Sobic007G187400 Sobic001G290500 Sobic001G290500 Sobic004G343800--Sobic001G290500 Sobic001G194700 Sobic001G194700 Sobic004G343800--Sobic001G194700 Sobic003G002700 Sobic003G002700 Sobic004G343800--Sobic003G002700 Sobic003G017200 Sobic003G017200 Sobic002G239900--Sobic003G017200 Sobic006G200200 Sobic006G200200 Sobic002G239900--Sobic006G200200 Sobic001G155300 Sobic001G155300 Sobic002G239900--Sobic001G155300 Sobic001G157400 Sobic001G157400 Sobic002G239900--Sobic001G157400 Sobic007G153001 Sobic007G153001 Sobic002G239900--Sobic007G153001 Sobic002G239900--Sobic001G241600 Sobic001G160200 Sobic001G160200 Sobic002G239900--Sobic001G160200 Sobic003G378000 Sobic003G378000 Sobic002G239900--Sobic003G378000 Sobic001G106000 Sobic001G106000 Sobic002G239900--Sobic001G106000 Sobic010G101400 Sobic010G101400 Sobic008G119400--Sobic010G101400 Sobic001G197400 Sobic001G197400 Sobic008G119400--Sobic001G197400 Sobic001G217000 Sobic001G217000 Sobic008G119400--Sobic001G217000 Sobic010G008600 Sobic010G008600 Sobic008G119400--Sobic010G008600 Sobic009G182200 Sobic009G182200 Sobic008G119400--Sobic009G182200 Sobic008G119400--Sobic001G157400 Sobic001G050800 Sobic001G050800 Sobic008G119400--Sobic001G050800 Sobic002G124700 Sobic002G124700 Sobic008G119400--Sobic002G124700 Sobic010G201388 Sobic010G201388 Sobic008G119400--Sobic010G201388 Sobic004G116300 Sobic004G116300 Sobic001G424400--Sobic004G116300 Sobic010G011900 Sobic010G011900 Sobic001G424400--Sobic010G011900 Sobic001G424400--Sobic009G161900 Sobic010G147600 Sobic010G147600 Sobic001G424400--Sobic010G147600 Sobic001G424400--Sobic003G281800 Sobic001G424400--Sobic001G155300 Sobic001G424400--Sobic003G378000 Sobic001G424400--Sobic001G241600 Sobic003G354000 Sobic003G354000 Sobic001G424400--Sobic003G354000 Sobic001G241600--Sobic002G239900 Sobic001G241600--Sobic003G378000 Sobic005G079700 Sobic005G079700 Sobic001G241600--Sobic005G079700 Sobic001G241600--Sobic001G155300 Sobic001G241600--Sobic003G281800 Sobic008G088839 Sobic008G088839 Sobic001G241600--Sobic008G088839 Sobic003G198200 Sobic003G198200 Sobic001G241600--Sobic003G198200 Sobic001G241600--Sobic006G200200 Sobic008G170600 Sobic008G170600 Sobic001G241600--Sobic008G170600 Sobic009G076600 Sobic009G076600 Sobic006G206800--Sobic009G076600 Sobic006G206800--Sobic003G281800 Sobic006G206800--Sobic009G161900 Sobic001G333900 Sobic001G333900 Sobic006G206800--Sobic001G333900 Sobic009G030200 Sobic009G030200 Sobic006G206800--Sobic009G030200 Sobic006G206800--Sobic003G198200 Sobic004G353600 Sobic004G353600 Sobic006G206800--Sobic004G353600 Sobic003G144200 Sobic003G144200 Sobic006G206800--Sobic003G144200 Sobic005G121200 Sobic005G121200 Sobic006G206800--Sobic005G121200 Sobic009G073400 Sobic009G073400 Sobic004G146300--Sobic009G073400 Sobic010G250800 Sobic010G250800 Sobic004G146300--Sobic010G250800 Sobic009G001200 Sobic009G001200 Sobic004G146300--Sobic009G001200 Sobic010G252700 Sobic010G252700 Sobic004G146300--Sobic010G252700 Sobic001G122100 Sobic001G122100 Sobic004G146300--Sobic001G122100 Sobic001G442700 Sobic001G442700 Sobic004G146300--Sobic001G442700 Sobic003G345200 Sobic003G345200 Sobic004G146300--Sobic003G345200 Sobic009G013000 Sobic009G013000 Sobic004G146300--Sobic009G013000 Sobic009G167100 Sobic009G167100 Sobic004G146300--Sobic009G167100 Sobic003G319000 Sobic003G319000 Sobic010G186500--Sobic003G319000 Sobic002G418100 Sobic002G418100 Sobic010G186500--Sobic002G418100 Sobic003G009200 Sobic003G009200 Sobic010G186500--Sobic003G009200 Sobic007G051400 Sobic007G051400 Sobic010G186500--Sobic007G051400 Sobic003G312400 Sobic003G312400 Sobic010G186500--Sobic003G312400 Sobic006G189200 Sobic006G189200 Sobic010G186500--Sobic006G189200 Sobic002G260700 Sobic002G260700 Sobic010G186500--Sobic002G260700 Sobic001G026600 Sobic001G026600 Sobic010G186500--Sobic001G026600 Sobic004G331900 Sobic004G331900 Sobic010G186500--Sobic004G331900 Sobic009G161900--Sobic010G147600 Sobic004G058600 Sobic004G058600 Sobic009G161900--Sobic004G058600 Sobic001G471000 Sobic001G471000 Sobic009G161900--Sobic001G471000 Sobic009G161900--Sobic001G333900 Sobic001G193500 Sobic001G193500 Sobic009G161900--Sobic001G193500 Sobic004G066500 Sobic004G066500 Sobic009G161900--Sobic004G066500 Sobic009G161900--Sobic001G424400 Sobic009G161900--Sobic003G378000 Sobic010G170000 Sobic010G170000 Sobic009G161900--Sobic010G170000
Octagon: transcription factors


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