Gene annotation
Transcriptome id Sobic.003G095800.1
Synonym Sb03g008030
Functional annotation phosphatidylserine synthase, putative, expressed
UniProt C5XE99
Pfam PF03034
Panther DB PTHR15362 PTHR15362:SF11
NCBI CDD -
KEGG Orthology K08730; phosphatidylserine synthase 2
Gene Ontology GO:0006659; phosphatidylserine biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G15110 : phosphatidyl serine synthase family protein
RAP-DB (Rice) LOC_Os01g02890.1 : phosphatidylserine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a036550 , Zm00025a023700 , Zm00025a044490 , Zm00025a035494
Brachypodium PNT70751 , PNT69853 , KQK02431 , KQK04994 , KQK04993 , KQK04992 , KQK04991 , KQK04990
Barley HORVU1Hr1G084260.40 , HORVU1Hr1G084260.41 , HORVU1Hr1G084260.42 , HORVU1Hr1G084260.43 , HORVU1Hr1G084260.44 , HORVU1Hr1G084260.45 , HORVU1Hr1G084260.46 , HORVU1Hr1G084260.47 , HORVU1Hr1G084260.48 , HORVU1Hr1G084260.49 , HORVU3Hr1G002790.50 , HORVU3Hr1G002790.48 , HORVU3Hr1G002790.49 , HORVU3Hr1G002790.40 , HORVU3Hr1G002790.41 , HORVU3Hr1G002790.42 , HORVU3Hr1G002790.43 , HORVU3Hr1G002790.44 , HORVU3Hr1G002790.45 , HORVU3Hr1G002790.46 , HORVU3Hr1G002790.47 , HORVU1Hr1G084260.19 , HORVU1Hr1G084260.18 , HORVU1Hr1G084260.17 , HORVU1Hr1G084260.16 , HORVU1Hr1G084260.15 , HORVU1Hr1G084260.14 , HORVU1Hr1G084260.13 , HORVU1Hr1G084260.12 , HORVU1Hr1G084260.11 , HORVU1Hr1G084260.10 , HORVU3Hr1G002790.17 , HORVU3Hr1G002790.15 , HORVU3Hr1G002790.14 , HORVU3Hr1G002790.13 , HORVU3Hr1G002790.12 , HORVU3Hr1G002790.11 , HORVU3Hr1G002790.10 , HORVU3Hr1G002790.19 , HORVU3Hr1G002790.18 , HORVU1Hr1G084260.7 , HORVU1Hr1G084260.6 , HORVU1Hr1G084260.5 , HORVU1Hr1G084260.4 , HORVU1Hr1G084260.3 , HORVU1Hr1G084260.2 , HORVU3Hr1G002790.9 , HORVU3Hr1G002790.8 , HORVU3Hr1G002790.6 , HORVU3Hr1G002790.5 , HORVU3Hr1G002790.4 , HORVU3Hr1G002790.3 , HORVU3Hr1G002790.2 , HORVU1Hr1G084260.9 , HORVU1Hr1G084260.8 , HORVU1Hr1G084260.31 , HORVU1Hr1G084260.30 , HORVU1Hr1G084260.33 , HORVU1Hr1G084260.32 , HORVU1Hr1G084260.35 , HORVU1Hr1G084260.1 , HORVU1Hr1G084260.37 , HORVU1Hr1G084260.36 , HORVU1Hr1G084260.38 , HORVU3Hr1G002790.39 , HORVU3Hr1G002790.38 , HORVU3Hr1G002790.31 , HORVU3Hr1G002790.30 , HORVU3Hr1G002790.33 , HORVU3Hr1G002790.32 , HORVU3Hr1G002790.35 , HORVU3Hr1G002790.34 , HORVU3Hr1G002790.37 , HORVU3Hr1G002790.36 , HORVU1Hr1G084260.52 , HORVU1Hr1G084260.51 , HORVU1Hr1G084260.50 , HORVU3Hr1G002790.1 , HORVU1Hr1G084260.26 , HORVU1Hr1G084260.27 , HORVU1Hr1G084260.24 , HORVU1Hr1G084260.25 , HORVU1Hr1G084260.22 , HORVU1Hr1G084260.23 , HORVU1Hr1G084260.20 , HORVU1Hr1G084260.21 , HORVU1Hr1G084260.29 , HORVU3Hr1G002790.28 , HORVU3Hr1G002790.29 , HORVU3Hr1G002790.26 , HORVU3Hr1G002790.27 , HORVU3Hr1G002790.24 , HORVU3Hr1G002790.25 , HORVU3Hr1G002790.22 , HORVU3Hr1G002790.23 , HORVU3Hr1G002790.20 , HORVU3Hr1G002790.21
Wheat TraesCS3A02G021500 , TraesCS1D02G389300 , TraesCS3B02G024600 , TraesCS1A02G381500 , TraesCS3D02G025400 , TraesCS1B02G404000 , TraesCS1B02G404000 , TraesCS3A02G021500
Populus -


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cDNA sequences
Sobic.003G095800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G270800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
2 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
3 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
4 Sobic.010G054100 SHR5-receptor-like kinase, putative, expressed -
5 Sobic.003G237800 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.003G075400 expressed protein K07466: RFA1, RPA1, replication factor A1
7 Sobic.008G013300 expressed protein -
8 Sobic.004G305400 coronatine-insensitive protein 1, putative, expressed -
9 Sobic.004G119700 WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
10 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
11 Sobic.004G146300 AP003256-AK101847 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed -
12 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
13 Sobic.002G254500 oxidoreductase, putative, expressed K18160: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2
14 Sobic.006G029400 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.006G094100 expressed protein -
16 Sobic.004G208100 expressed protein -
17 Sobic.003G306900 deoxycytidylate deaminase, putative, expressed K01493: dCMP deaminase
18 Sobic.010G168900 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
19 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
20 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase


Gene co-expression network
sample Sobic003G095800 Sobic003G095800 Sobic004G270800 Sobic004G270800 Sobic003G095800--Sobic004G270800 Sobic010G252700 Sobic010G252700 Sobic003G095800--Sobic010G252700 Sobic001G122100 Sobic001G122100 Sobic003G095800--Sobic001G122100 Sobic010G054100 Sobic010G054100 Sobic003G095800--Sobic010G054100 Sobic003G237800 Sobic003G237800 Sobic003G095800--Sobic003G237800 Sobic003G075400 Sobic003G075400 Sobic003G095800--Sobic003G075400 Sobic008G013300 Sobic008G013300 Sobic003G095800--Sobic008G013300 Sobic004G305400 Sobic004G305400 Sobic003G095800--Sobic004G305400 Sobic004G119700 Sobic004G119700 Sobic003G095800--Sobic004G119700 Sobic004G270800--Sobic004G119700 Sobic009G087000 Sobic009G087000 Sobic004G270800--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic004G270800--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic004G270800--Sobic005G110535 Sobic010G147700 Sobic010G147700 Sobic004G270800--Sobic010G147700 Sobic003G369200 Sobic003G369200 Sobic004G270800--Sobic003G369200 Sobic006G051000 Sobic006G051000 Sobic004G270800--Sobic006G051000 Sobic006G195500 Sobic006G195500 Sobic004G270800--Sobic006G195500 Sobic008G129200 Sobic008G129200 Sobic004G270800--Sobic008G129200 Sobic008G179000 Sobic008G179000 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic002G362200 Sobic002G362200 Sobic010G252700--Sobic002G362200 Sobic001G149100 Sobic001G149100 Sobic010G252700--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic002G303800 Sobic002G303800 Sobic001G122100--Sobic002G303800 Sobic009G087300 Sobic009G087300 Sobic001G122100--Sobic009G087300 Sobic006G281400 Sobic006G281400 Sobic001G122100--Sobic006G281400 Sobic001G122100--Sobic003G369200 Sobic002G021200 Sobic002G021200 Sobic001G122100--Sobic002G021200 Sobic003G444300 Sobic003G444300 Sobic001G122100--Sobic003G444300 Sobic001G122100--Sobic009G052100 Sobic010G105400 Sobic010G105400 Sobic001G122100--Sobic010G105400 Sobic001G122100--Sobic010G252700 Sobic010G054100--Sobic004G270800 Sobic010G067800 Sobic010G067800 Sobic010G054100--Sobic010G067800 Sobic006G172200 Sobic006G172200 Sobic010G054100--Sobic006G172200 Sobic009G073400 Sobic009G073400 Sobic010G054100--Sobic009G073400 Sobic003G017500 Sobic003G017500 Sobic010G054100--Sobic003G017500 Sobic007G139500 Sobic007G139500 Sobic010G054100--Sobic007G139500 Sobic002G383100 Sobic002G383100 Sobic010G054100--Sobic002G383100 Sobic001G159800 Sobic001G159800 Sobic010G054100--Sobic001G159800 Sobic008G127550 Sobic008G127550 Sobic010G054100--Sobic008G127550 Sobic003G237800--Sobic003G095800 Sobic010G216000 Sobic010G216000 Sobic003G237800--Sobic010G216000 Sobic009G194200 Sobic009G194200 Sobic003G237800--Sobic009G194200 Sobic001G119800 Sobic001G119800 Sobic003G237800--Sobic001G119800 Sobic007G137300 Sobic007G137300 Sobic003G237800--Sobic007G137300 Sobic003G252500 Sobic003G252500 Sobic003G237800--Sobic003G252500 Sobic009G167800 Sobic009G167800 Sobic003G237800--Sobic009G167800 Sobic004G331900 Sobic004G331900 Sobic003G237800--Sobic004G331900 Sobic001G436100 Sobic001G436100 Sobic003G237800--Sobic001G436100 Sobic010G077300 Sobic010G077300 Sobic003G075400--Sobic010G077300 Sobic004G066500 Sobic004G066500 Sobic003G075400--Sobic004G066500 Sobic010G175000 Sobic010G175000 Sobic003G075400--Sobic010G175000 Sobic010G222900 Sobic010G222900 Sobic003G075400--Sobic010G222900 Sobic003G075400--Sobic003G095800 Sobic001G092800 Sobic001G092800 Sobic003G075400--Sobic001G092800 Sobic006G088400 Sobic006G088400 Sobic003G075400--Sobic006G088400 Sobic004G234300 Sobic004G234300 Sobic003G075400--Sobic004G234300 Sobic006G275500 Sobic006G275500 Sobic003G075400--Sobic006G275500 Sobic002G297600 Sobic002G297600 Sobic008G013300--Sobic002G297600 Sobic001G115500 Sobic001G115500 Sobic008G013300--Sobic001G115500 Sobic003G361400 Sobic003G361400 Sobic008G013300--Sobic003G361400 Sobic002G318600 Sobic002G318600 Sobic008G013300--Sobic002G318600 Sobic007G010900 Sobic007G010900 Sobic008G013300--Sobic007G010900 Sobic008G013300--Sobic009G073400 Sobic003G259600 Sobic003G259600 Sobic008G013300--Sobic003G259600 Sobic002G264300 Sobic002G264300 Sobic008G013300--Sobic002G264300 Sobic008G040700 Sobic008G040700 Sobic008G013300--Sobic008G040700 Sobic001G335900 Sobic001G335900 Sobic004G305400--Sobic001G335900 Sobic002G366900 Sobic002G366900 Sobic004G305400--Sobic002G366900 Sobic010G017800 Sobic010G017800 Sobic004G305400--Sobic010G017800 Sobic002G218700 Sobic002G218700 Sobic004G305400--Sobic002G218700 Sobic009G226400 Sobic009G226400 Sobic004G305400--Sobic009G226400 Sobic006G091000 Sobic006G091000 Sobic004G305400--Sobic006G091000 Sobic004G347100 Sobic004G347100 Sobic004G305400--Sobic004G347100 Sobic005G059400 Sobic005G059400 Sobic004G305400--Sobic005G059400 Sobic002G039200 Sobic002G039200 Sobic004G305400--Sobic002G039200 Sobic004G119700--Sobic004G270800 Sobic010G054600 Sobic010G054600 Sobic004G119700--Sobic010G054600 Sobic001G142000 Sobic001G142000 Sobic004G119700--Sobic001G142000 Sobic004G119700--Sobic003G369200 Sobic004G119700--Sobic008G129200 Sobic004G119700--Sobic010G147700 Sobic004G331600 Sobic004G331600 Sobic004G119700--Sobic004G331600 Sobic004G119700--Sobic005G110535 Sobic004G119700--Sobic009G087000
Octagon: transcription factors


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