Gene annotation
Transcriptome id Sobic.003G075400.1
Synonym Sb03g006365
Functional annotation expressed protein
UniProt C5XQ22
Pfam PF08646
Panther DB PTHR23273 PTHR23273:SF10
NCBI CDD -
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19130 : Replication factor-A protein 1-related
RAP-DB (Rice) LOC_Os01g73070.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G077300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized mscS family protein, putative, expressed -
2 Sobic.004G066500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
3 Sobic.010G175000 expressed protein -
4 Sobic.010G222900 expressed protein -
5 Sobic.003G095800 phosphatidylserine synthase, putative, expressed K08730: phosphatidylserine synthase 2
6 Sobic.001G092800 acyl-CoA-binding domain-containing protein 6, putative, expressed -
7 Sobic.006G088400 OsFBX135 - F-box domain containing protein, expressed -
8 Sobic.004G234300 DUF581 domain containing protein, expressed -
9 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
10 Sobic.003G098300 hydroxyproline-rich glycoprotein family protein, putative, expressed -
11 Sobic.003G427300 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
12 Sobic.002G206700 -(PubMedID : 24813726)@CPuORF8 - conserved peptide uORF-containing transcript, expressed K01611: speD, S-adenosylmethionine decarboxylase
13 Sobic.004G192500 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
15 Sobic.010G170000 Triacylglycerol biosynthesis defect 1(PubMedID : 26320239)@O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
16 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
17 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
18 Sobic.003G001800 expressed protein -
19 Sobic.003G002700 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
20 Sobic.007G053100 amino acid permease family protein, putative, expressed -


Gene co-expression network
sample Sobic003G075400 Sobic003G075400 Sobic010G077300 Sobic010G077300 Sobic003G075400--Sobic010G077300 Sobic004G066500 Sobic004G066500 Sobic003G075400--Sobic004G066500 Sobic010G175000 Sobic010G175000 Sobic003G075400--Sobic010G175000 Sobic010G222900 Sobic010G222900 Sobic003G075400--Sobic010G222900 Sobic003G095800 Sobic003G095800 Sobic003G075400--Sobic003G095800 Sobic001G092800 Sobic001G092800 Sobic003G075400--Sobic001G092800 Sobic006G088400 Sobic006G088400 Sobic003G075400--Sobic006G088400 Sobic004G234300 Sobic004G234300 Sobic003G075400--Sobic004G234300 Sobic006G275500 Sobic006G275500 Sobic003G075400--Sobic006G275500 Sobic003G427300 Sobic003G427300 Sobic010G077300--Sobic003G427300 Sobic010G077300--Sobic003G075400 Sobic010G170000 Sobic010G170000 Sobic010G077300--Sobic010G170000 Sobic003G098300 Sobic003G098300 Sobic010G077300--Sobic003G098300 Sobic010G077300--Sobic004G066500 Sobic004G058600 Sobic004G058600 Sobic010G077300--Sobic004G058600 Sobic010G077300--Sobic004G234300 Sobic001G493500 Sobic001G493500 Sobic010G077300--Sobic001G493500 Sobic001G508200 Sobic001G508200 Sobic010G077300--Sobic001G508200 Sobic008G191850 Sobic008G191850 Sobic004G066500--Sobic008G191850 Sobic007G053100 Sobic007G053100 Sobic004G066500--Sobic007G053100 Sobic004G033200 Sobic004G033200 Sobic004G066500--Sobic004G033200 Sobic004G066500--Sobic003G427300 Sobic010G024600 Sobic010G024600 Sobic004G066500--Sobic010G024600 Sobic004G066500--Sobic003G098300 Sobic002G266300 Sobic002G266300 Sobic004G066500--Sobic002G266300 Sobic001G044300 Sobic001G044300 Sobic004G066500--Sobic001G044300 Sobic004G066500--Sobic001G508200 Sobic004G192500 Sobic004G192500 Sobic010G175000--Sobic004G192500 Sobic010G257000 Sobic010G257000 Sobic010G175000--Sobic010G257000 Sobic006G226000 Sobic006G226000 Sobic010G175000--Sobic006G226000 Sobic009G188900 Sobic009G188900 Sobic010G175000--Sobic009G188900 Sobic006G281900 Sobic006G281900 Sobic010G175000--Sobic006G281900 Sobic010G175000--Sobic006G275500 Sobic006G016700 Sobic006G016700 Sobic010G175000--Sobic006G016700 Sobic002G168000 Sobic002G168000 Sobic010G175000--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic010G175000--Sobic002G055800 Sobic004G040800 Sobic004G040800 Sobic010G222900--Sobic004G040800 Sobic007G050800 Sobic007G050800 Sobic010G222900--Sobic007G050800 Sobic006G262501 Sobic006G262501 Sobic010G222900--Sobic006G262501 Sobic010G222900--Sobic004G234300 Sobic004G222200 Sobic004G222200 Sobic010G222900--Sobic004G222200 Sobic003G369600 Sobic003G369600 Sobic010G222900--Sobic003G369600 Sobic008G118100 Sobic008G118100 Sobic010G222900--Sobic008G118100 Sobic010G222900--Sobic010G175000 Sobic010G222900--Sobic003G075400 Sobic004G270800 Sobic004G270800 Sobic003G095800--Sobic004G270800 Sobic010G252700 Sobic010G252700 Sobic003G095800--Sobic010G252700 Sobic001G122100 Sobic001G122100 Sobic003G095800--Sobic001G122100 Sobic010G054100 Sobic010G054100 Sobic003G095800--Sobic010G054100 Sobic003G237800 Sobic003G237800 Sobic003G095800--Sobic003G237800 Sobic003G095800--Sobic003G075400 Sobic008G013300 Sobic008G013300 Sobic003G095800--Sobic008G013300 Sobic004G305400 Sobic004G305400 Sobic003G095800--Sobic004G305400 Sobic004G119700 Sobic004G119700 Sobic003G095800--Sobic004G119700 Sobic005G021000 Sobic005G021000 Sobic001G092800--Sobic005G021000 Sobic009G246250 Sobic009G246250 Sobic001G092800--Sobic009G246250 Sobic001G092800--Sobic002G055800 Sobic006G095900 Sobic006G095900 Sobic001G092800--Sobic006G095900 Sobic001G092800--Sobic002G266300 Sobic008G149300 Sobic008G149300 Sobic001G092800--Sobic008G149300 Sobic006G208000 Sobic006G208000 Sobic001G092800--Sobic006G208000 Sobic001G393101 Sobic001G393101 Sobic001G092800--Sobic001G393101 Sobic001G261420 Sobic001G261420 Sobic001G092800--Sobic001G261420 Sobic003G002700 Sobic003G002700 Sobic006G088400--Sobic003G002700 Sobic002G416150 Sobic002G416150 Sobic006G088400--Sobic002G416150 Sobic002G429700 Sobic002G429700 Sobic006G088400--Sobic002G429700 Sobic009G053101 Sobic009G053101 Sobic006G088400--Sobic009G053101 Sobic006G088400--Sobic003G075400 Sobic007G101100 Sobic007G101100 Sobic006G088400--Sobic007G101100 Sobic006G088400--Sobic010G257000 Sobic006G088400--Sobic010G175000 Sobic005G078700 Sobic005G078700 Sobic006G088400--Sobic005G078700 Sobic003G223900 Sobic003G223900 Sobic004G234300--Sobic003G223900 Sobic004G234300--Sobic010G222900 Sobic010G150200 Sobic010G150200 Sobic004G234300--Sobic010G150200 Sobic004G234300--Sobic004G040800 Sobic004G234300--Sobic001G493500 Sobic002G239900 Sobic002G239900 Sobic004G234300--Sobic002G239900 Sobic010G011900 Sobic010G011900 Sobic004G234300--Sobic010G011900 Sobic009G201500 Sobic009G201500 Sobic004G234300--Sobic009G201500 Sobic004G234300--Sobic010G077300 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic003G147500 Sobic003G147500 Sobic006G275500--Sobic003G147500 Sobic007G187700 Sobic007G187700 Sobic006G275500--Sobic007G187700 Sobic008G090000 Sobic008G090000 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic009G146250 Sobic009G146250 Sobic006G275500--Sobic009G146250
Octagon: transcription factors


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