Gene annotation
Transcriptome id Sobic.010G222900.2
Synonym Sb10g026800, PRD1, AtPRD1
Functional annotation expressed protein
UniProt A0A1W0VU89
Pfam -
Panther DB PTHR36379
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14180 : putative recombination initiation defect 1
RAP-DB (Rice) LOC_Os04g28020.1 : expressed protein
MaizeGDB (Corn) Zm00025a051767
Brachypodium KQJ92492 , PNT65533 , PNT65532 , PNT65531 , PNT65534
Barley HORVU2Hr1G067040.19 , HORVU2Hr1G067040.18 , HORVU2Hr1G067040.17 , HORVU2Hr1G067040.16 , HORVU2Hr1G067040.15 , HORVU2Hr1G067040.13 , HORVU2Hr1G067040.12 , HORVU2Hr1G067040.11 , HORVU2Hr1G067040.26 , HORVU2Hr1G067040.27 , HORVU2Hr1G067040.24 , HORVU2Hr1G067040.25 , HORVU2Hr1G067040.22 , HORVU2Hr1G067040.23 , HORVU2Hr1G067040.20 , HORVU2Hr1G067040.21 , HORVU2Hr1G067040.28 , HORVU2Hr1G067040.7 , HORVU2Hr1G067040.6 , HORVU2Hr1G067040.5 , HORVU2Hr1G067040.4 , HORVU2Hr1G067040.2 , HORVU2Hr1G067040.1
Wheat TraesCS2B02G292500 , TraesCS2D02G274100 , TraesCS2D02G274100 , TraesCS2A02G275100 , TraesCS2A02G275100 , TraesCS2B02G292500 , TraesCS2B02G292500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G040800 ZOS2-03 - C2H2 zinc finger protein, expressed -
2 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
3 Sobic.006G262501 - -
4 Sobic.004G234300 DUF581 domain containing protein, expressed -
5 Sobic.004G222200 - -
6 Sobic.003G369600 CorA-like magnesium transporter protein, putative, expressed -
7 Sobic.008G118100 kelch repeat protein, putative, expressed -
8 Sobic.010G175000 expressed protein -
9 Sobic.003G075400 expressed protein K07466: RFA1, RPA1, replication factor A1
10 Sobic.006G226000 expressed protein -
11 Sobic.010G214800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -
12 Sobic.002G010000 NLI interacting factor-like phosphatase, putative, expressed -
13 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.007G082000 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.002G160400 Glucose-1-phosphate adenylyltransferase small subunit(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
16 Sobic.003G259300 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
18 Sobic.003G001800 expressed protein -
19 Sobic.010G037901 - -
20 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP


Gene co-expression network
sample Sobic010G222900 Sobic010G222900 Sobic004G040800 Sobic004G040800 Sobic010G222900--Sobic004G040800 Sobic007G050800 Sobic007G050800 Sobic010G222900--Sobic007G050800 Sobic006G262501 Sobic006G262501 Sobic010G222900--Sobic006G262501 Sobic004G234300 Sobic004G234300 Sobic010G222900--Sobic004G234300 Sobic004G222200 Sobic004G222200 Sobic010G222900--Sobic004G222200 Sobic003G369600 Sobic003G369600 Sobic010G222900--Sobic003G369600 Sobic008G118100 Sobic008G118100 Sobic010G222900--Sobic008G118100 Sobic010G175000 Sobic010G175000 Sobic010G222900--Sobic010G175000 Sobic003G075400 Sobic003G075400 Sobic010G222900--Sobic003G075400 Sobic004G040800--Sobic010G222900 Sobic003G435400 Sobic003G435400 Sobic004G040800--Sobic003G435400 Sobic004G040800--Sobic004G234300 Sobic004G040800--Sobic003G369600 Sobic001G496900 Sobic001G496900 Sobic004G040800--Sobic001G496900 Sobic006G199700 Sobic006G199700 Sobic004G040800--Sobic006G199700 Sobic006G017600 Sobic006G017600 Sobic004G040800--Sobic006G017600 Sobic010G252900 Sobic010G252900 Sobic004G040800--Sobic010G252900 Sobic006G096800 Sobic006G096800 Sobic004G040800--Sobic006G096800 Sobic009G002200 Sobic009G002200 Sobic007G050800--Sobic009G002200 Sobic006G016700 Sobic006G016700 Sobic007G050800--Sobic006G016700 Sobic007G050800--Sobic008G118100 Sobic006G226000 Sobic006G226000 Sobic007G050800--Sobic006G226000 Sobic002G168000 Sobic002G168000 Sobic007G050800--Sobic002G168000 Sobic005G153000 Sobic005G153000 Sobic007G050800--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic007G050800--Sobic006G135800 Sobic007G187700 Sobic007G187700 Sobic007G050800--Sobic007G187700 Sobic009G012600 Sobic009G012600 Sobic007G050800--Sobic009G012600 Sobic005G045700 Sobic005G045700 Sobic006G262501--Sobic005G045700 Sobic002G127900 Sobic002G127900 Sobic006G262501--Sobic002G127900 Sobic005G036200 Sobic005G036200 Sobic006G262501--Sobic005G036200 Sobic006G262501--Sobic008G118100 Sobic003G368901 Sobic003G368901 Sobic006G262501--Sobic003G368901 Sobic006G262501--Sobic009G012600 Sobic006G262501--Sobic007G050800 Sobic005G139300 Sobic005G139300 Sobic006G262501--Sobic005G139300 Sobic006G262501--Sobic010G175000 Sobic003G223900 Sobic003G223900 Sobic004G234300--Sobic003G223900 Sobic004G234300--Sobic010G222900 Sobic010G150200 Sobic010G150200 Sobic004G234300--Sobic010G150200 Sobic004G234300--Sobic004G040800 Sobic001G493500 Sobic001G493500 Sobic004G234300--Sobic001G493500 Sobic002G239900 Sobic002G239900 Sobic004G234300--Sobic002G239900 Sobic010G011900 Sobic010G011900 Sobic004G234300--Sobic010G011900 Sobic009G201500 Sobic009G201500 Sobic004G234300--Sobic009G201500 Sobic010G077300 Sobic010G077300 Sobic004G234300--Sobic010G077300 Sobic004G222150 Sobic004G222150 Sobic004G222200--Sobic004G222150 Sobic002G144600 Sobic002G144600 Sobic004G222200--Sobic002G144600 Sobic004G123200 Sobic004G123200 Sobic004G222200--Sobic004G123200 Sobic010G250400 Sobic010G250400 Sobic004G222200--Sobic010G250400 Sobic002G055800 Sobic002G055800 Sobic004G222200--Sobic002G055800 Sobic008G046200 Sobic008G046200 Sobic004G222200--Sobic008G046200 Sobic004G222200--Sobic005G153000 Sobic004G222200--Sobic006G226000 Sobic003G001800 Sobic003G001800 Sobic004G222200--Sobic003G001800 Sobic003G369600--Sobic010G222900 Sobic003G369600--Sobic003G435400 Sobic003G369600--Sobic004G040800 Sobic005G092301 Sobic005G092301 Sobic003G369600--Sobic005G092301 Sobic003G369600--Sobic010G011900 Sobic006G081700 Sobic006G081700 Sobic003G369600--Sobic006G081700 Sobic003G369600--Sobic006G199700 Sobic010G211200 Sobic010G211200 Sobic003G369600--Sobic010G211200 Sobic003G369600--Sobic003G075400 Sobic008G118100--Sobic007G050800 Sobic002G187600 Sobic002G187600 Sobic008G118100--Sobic002G187600 Sobic004G286200 Sobic004G286200 Sobic008G118100--Sobic004G286200 Sobic006G281900 Sobic006G281900 Sobic008G118100--Sobic006G281900 Sobic009G225500 Sobic009G225500 Sobic008G118100--Sobic009G225500 Sobic002G095300 Sobic002G095300 Sobic008G118100--Sobic002G095300 Sobic008G118100--Sobic009G002200 Sobic008G090400 Sobic008G090400 Sobic008G118100--Sobic008G090400 Sobic005G157300 Sobic005G157300 Sobic008G118100--Sobic005G157300 Sobic004G192500 Sobic004G192500 Sobic010G175000--Sobic004G192500 Sobic010G257000 Sobic010G257000 Sobic010G175000--Sobic010G257000 Sobic010G175000--Sobic006G226000 Sobic009G188900 Sobic009G188900 Sobic010G175000--Sobic009G188900 Sobic010G175000--Sobic006G281900 Sobic006G275500 Sobic006G275500 Sobic010G175000--Sobic006G275500 Sobic010G175000--Sobic006G016700 Sobic010G175000--Sobic002G168000 Sobic010G175000--Sobic002G055800 Sobic003G075400--Sobic010G077300 Sobic004G066500 Sobic004G066500 Sobic003G075400--Sobic004G066500 Sobic003G075400--Sobic010G175000 Sobic003G075400--Sobic010G222900 Sobic003G095800 Sobic003G095800 Sobic003G075400--Sobic003G095800 Sobic001G092800 Sobic001G092800 Sobic003G075400--Sobic001G092800 Sobic006G088400 Sobic006G088400 Sobic003G075400--Sobic006G088400 Sobic003G075400--Sobic004G234300 Sobic003G075400--Sobic006G275500
Octagon: transcription factors


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