Gene annotation
Transcriptome id Sobic.004G040800.2,Sobic.004G040800.3,Sobic.004G040800.1
Synonym SE, Sb04g003540
Functional annotation ZOS2-03 - C2H2 zinc finger protein, expressed
UniProt A0A1Z5RKU7 , A0A194YNP9 , A0A194YMM5
Pfam PF12066 PF04959
Panther DB PTHR13165 PTHR13165:SF1
NCBI CDD KOG2295; C2H2 Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27100 : C2H2 zinc-finger protein SERRATE (SE)
RAP-DB (Rice) LOC_Os02g05610.1 : ZOS2-03 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a041792 , Zm00025a018344
Brachypodium -
Barley HORVU6Hr1G021620.1 , HORVU6Hr1G021620.3 , HORVU6Hr1G021620.2 , HORVU6Hr1G021620.5 , HORVU6Hr1G021620.4
Wheat TraesCS6A02G119000 , TraesCS6D02G108900 , TraesCS6B02G147000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G222900 expressed protein -
2 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -
3 Sobic.004G234300 DUF581 domain containing protein, expressed -
4 Sobic.003G369600 CorA-like magnesium transporter protein, putative, expressed -
5 Sobic.001G496900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
6 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
7 Sobic.006G017600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
8 Sobic.010G252900 methyl-binding domain protein MBD, putative, expressed -
9 Sobic.006G096800 expressed protein -
10 Sobic.002G418100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
11 Sobic.004G084200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@calcium-binding mitochondrial carrier CBG00135, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
12 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
13 Sobic.001G534400 - -
14 Sobic.002G260700 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
15 Sobic.003G301800 "C3 PTPC, unknown so far"(PubMedID : 2308851)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
16 Sobic.009G014000 expressed protein -
17 Sobic.004G340100 PB1 domain containing protein, expressed -
18 Sobic.007G127950 - -
19 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
20 Sobic.002G206700 -(PubMedID : 24813726)@CPuORF8 - conserved peptide uORF-containing transcript, expressed K01611: speD, S-adenosylmethionine decarboxylase


Gene co-expression network
sample Sobic004G040800 Sobic004G040800 Sobic010G222900 Sobic010G222900 Sobic004G040800--Sobic010G222900 Sobic003G435400 Sobic003G435400 Sobic004G040800--Sobic003G435400 Sobic004G234300 Sobic004G234300 Sobic004G040800--Sobic004G234300 Sobic003G369600 Sobic003G369600 Sobic004G040800--Sobic003G369600 Sobic001G496900 Sobic001G496900 Sobic004G040800--Sobic001G496900 Sobic006G199700 Sobic006G199700 Sobic004G040800--Sobic006G199700 Sobic006G017600 Sobic006G017600 Sobic004G040800--Sobic006G017600 Sobic010G252900 Sobic010G252900 Sobic004G040800--Sobic010G252900 Sobic006G096800 Sobic006G096800 Sobic004G040800--Sobic006G096800 Sobic010G222900--Sobic004G040800 Sobic007G050800 Sobic007G050800 Sobic010G222900--Sobic007G050800 Sobic006G262501 Sobic006G262501 Sobic010G222900--Sobic006G262501 Sobic010G222900--Sobic004G234300 Sobic004G222200 Sobic004G222200 Sobic010G222900--Sobic004G222200 Sobic010G222900--Sobic003G369600 Sobic008G118100 Sobic008G118100 Sobic010G222900--Sobic008G118100 Sobic010G175000 Sobic010G175000 Sobic010G222900--Sobic010G175000 Sobic003G075400 Sobic003G075400 Sobic010G222900--Sobic003G075400 Sobic003G435400--Sobic006G199700 Sobic001G414100 Sobic001G414100 Sobic003G435400--Sobic001G414100 Sobic003G435400--Sobic006G096800 Sobic002G290100 Sobic002G290100 Sobic003G435400--Sobic002G290100 Sobic004G098800 Sobic004G098800 Sobic003G435400--Sobic004G098800 Sobic002G373600 Sobic002G373600 Sobic003G435400--Sobic002G373600 Sobic003G392275 Sobic003G392275 Sobic003G435400--Sobic003G392275 Sobic010G134700 Sobic010G134700 Sobic003G435400--Sobic010G134700 Sobic003G223800 Sobic003G223800 Sobic003G435400--Sobic003G223800 Sobic003G223900 Sobic003G223900 Sobic004G234300--Sobic003G223900 Sobic004G234300--Sobic010G222900 Sobic010G150200 Sobic010G150200 Sobic004G234300--Sobic010G150200 Sobic004G234300--Sobic004G040800 Sobic001G493500 Sobic001G493500 Sobic004G234300--Sobic001G493500 Sobic002G239900 Sobic002G239900 Sobic004G234300--Sobic002G239900 Sobic010G011900 Sobic010G011900 Sobic004G234300--Sobic010G011900 Sobic009G201500 Sobic009G201500 Sobic004G234300--Sobic009G201500 Sobic010G077300 Sobic010G077300 Sobic004G234300--Sobic010G077300 Sobic003G369600--Sobic010G222900 Sobic003G369600--Sobic003G435400 Sobic003G369600--Sobic004G040800 Sobic005G092301 Sobic005G092301 Sobic003G369600--Sobic005G092301 Sobic003G369600--Sobic010G011900 Sobic006G081700 Sobic006G081700 Sobic003G369600--Sobic006G081700 Sobic003G369600--Sobic006G199700 Sobic010G211200 Sobic010G211200 Sobic003G369600--Sobic010G211200 Sobic003G369600--Sobic003G075400 Sobic003G397100 Sobic003G397100 Sobic001G496900--Sobic003G397100 Sobic005G078700 Sobic005G078700 Sobic001G496900--Sobic005G078700 Sobic010G143600 Sobic010G143600 Sobic001G496900--Sobic010G143600 Sobic009G224300 Sobic009G224300 Sobic001G496900--Sobic009G224300 Sobic004G030600 Sobic004G030600 Sobic001G496900--Sobic004G030600 Sobic004G006000 Sobic004G006000 Sobic001G496900--Sobic004G006000 Sobic004G282500 Sobic004G282500 Sobic001G496900--Sobic004G282500 Sobic001G496900--Sobic004G040800 Sobic004G215600 Sobic004G215600 Sobic001G496900--Sobic004G215600 Sobic006G199700--Sobic003G435400 Sobic006G199700--Sobic002G373600 Sobic003G385000 Sobic003G385000 Sobic006G199700--Sobic003G385000 Sobic001G284425 Sobic001G284425 Sobic006G199700--Sobic001G284425 Sobic006G069200 Sobic006G069200 Sobic006G199700--Sobic006G069200 Sobic006G199700--Sobic003G223800 Sobic008G010900 Sobic008G010900 Sobic006G199700--Sobic008G010900 Sobic006G199700--Sobic004G098800 Sobic002G019750 Sobic002G019750 Sobic006G199700--Sobic002G019750 Sobic006G017600--Sobic008G010900 Sobic006G223800 Sobic006G223800 Sobic006G017600--Sobic006G223800 Sobic005G202000 Sobic005G202000 Sobic006G017600--Sobic005G202000 Sobic004G101500 Sobic004G101500 Sobic006G017600--Sobic004G101500 Sobic010G090700 Sobic010G090700 Sobic006G017600--Sobic010G090700 Sobic006G017600--Sobic004G040800 Sobic001G152600 Sobic001G152600 Sobic006G017600--Sobic001G152600 Sobic008G098700 Sobic008G098700 Sobic006G017600--Sobic008G098700 Sobic006G181500 Sobic006G181500 Sobic006G017600--Sobic006G181500 Sobic001G284400 Sobic001G284400 Sobic010G252900--Sobic001G284400 Sobic010G252900--Sobic002G373600 Sobic010G252900--Sobic001G284425 Sobic003G144200 Sobic003G144200 Sobic010G252900--Sobic003G144200 Sobic010G252900--Sobic006G199700 Sobic010G252900--Sobic003G435400 Sobic010G252900--Sobic004G040800 Sobic010G075000 Sobic010G075000 Sobic010G252900--Sobic010G075000 Sobic003G424300 Sobic003G424300 Sobic010G252900--Sobic003G424300 Sobic003G342500 Sobic003G342500 Sobic006G096800--Sobic003G342500 Sobic002G151500 Sobic002G151500 Sobic006G096800--Sobic002G151500 Sobic006G156400 Sobic006G156400 Sobic006G096800--Sobic006G156400 Sobic004G298600 Sobic004G298600 Sobic006G096800--Sobic004G298600 Sobic005G048600 Sobic005G048600 Sobic006G096800--Sobic005G048600 Sobic009G201000 Sobic009G201000 Sobic006G096800--Sobic009G201000 Sobic010G057600 Sobic010G057600 Sobic006G096800--Sobic010G057600 Sobic003G352900 Sobic003G352900 Sobic006G096800--Sobic003G352900 Sobic001G073700 Sobic001G073700 Sobic006G096800--Sobic001G073700
Octagon: transcription factors


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