Gene annotation
Transcriptome id Sobic.003G301800.1
Synonym PPC3, ATPPC3, phosphoenolpyruvate carboxylase 5 (SbPPC5), Sb03g035090, -;PEPC
Functional annotation "C3 PTPC, unknown so far" (PubMedID : 2308851)
phosphoenolphyruvate carboxylase (PubMedID : 26904072)
phosphoenolpyruvate carboxylase, putative, expressed
UniProt A0A1B6Q660
Pfam PF00311
Panther DB PTHR30523 PTHR30523:SF9
NCBI CDD -
KEGG Orthology K01595; phosphoenolpyruvate carboxylase
Gene Ontology GO:0015977; carbon fixation GO:0008964phosphoenolpyruvate carboxylase activity GO:0006099tricarboxylic acid cycle


Orthologs (automatic annotation)
TAIR AT3G14940 : phosphoenolpyruvate carboxylase 3
RAP-DB (Rice) LOC_Os08g27840.1 : phosphoenolpyruvate carboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a019988 , Zm00025a034476 , Zm00025a039995
Brachypodium KQK18156 , KQK18155 , PNT72885 , PNT72884 , KQJ89819
Barley HORVU3Hr1G073020.9 , HORVU3Hr1G073020.8 , HORVU3Hr1G073020.1 , HORVU3Hr1G073020.3 , HORVU3Hr1G073020.2 , HORVU3Hr1G073020.5 , HORVU3Hr1G073020.4 , HORVU3Hr1G073020.7 , HORVU3Hr1G073020.6 , HORVU3Hr1G073020.11 , HORVU3Hr1G073020.10 , HORVU3Hr1G073020.12 , HORVU7Hr1G080510.12 , HORVU7Hr1G080510.11 , HORVU7Hr1G080510.10 , HORVU7Hr1G080510.8 , HORVU7Hr1G080510.9 , HORVU7Hr1G080510.3 , HORVU7Hr1G080510.2 , HORVU7Hr1G080510.1 , HORVU7Hr1G080510.7 , HORVU7Hr1G080510.6 , HORVU7Hr1G080510.5 , HORVU7Hr1G080510.4
Wheat TraesCS3D02G295200 , TraesCS3B02G329800 , TraesCS7D02G333900 , TraesCS3A02G306700 , TraesCS5B02G179800 , TraesCS7B02G237900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G052800 FAR1 family protein, expressed -
2 Sobic.006G119900 zinc finger, ZZ type family protein, expressed K17987: next to BRCA1 gene 1 protein
3 Sobic.006G189000 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
4 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
5 Sobic.002G151500 R-interacting factor 1, putative, expressed -
6 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
7 Sobic.005G060100 growth regulator related protein, putative, expressed -
8 Sobic.009G168100 expressed protein -
9 Sobic.009G125800 expressed protein -
10 Sobic.002G322700 expressed protein -
11 Sobic.009G054400 ECT protein, putative, expressed -
12 Sobic.003G092100 - -
13 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
14 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.008G085950 - -
16 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -
17 Sobic.007G186400 resistance protein, putative, expressed -
18 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
19 Sobic.001G497000 RNA helicase SDE3, putative, expressed K18422: helicase MOV-10
20 Sobic.003G377300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4


Gene co-expression network
sample Sobic003G301800 Sobic003G301800 Sobic002G052800 Sobic002G052800 Sobic003G301800--Sobic002G052800 Sobic006G119900 Sobic006G119900 Sobic003G301800--Sobic006G119900 Sobic006G189000 Sobic006G189000 Sobic003G301800--Sobic006G189000 Sobic010G009700 Sobic010G009700 Sobic003G301800--Sobic010G009700 Sobic002G151500 Sobic002G151500 Sobic003G301800--Sobic002G151500 Sobic007G105700 Sobic007G105700 Sobic003G301800--Sobic007G105700 Sobic005G060100 Sobic005G060100 Sobic003G301800--Sobic005G060100 Sobic009G168100 Sobic009G168100 Sobic003G301800--Sobic009G168100 Sobic009G125800 Sobic009G125800 Sobic003G301800--Sobic009G125800 Sobic010G038200 Sobic010G038200 Sobic002G052800--Sobic010G038200 Sobic002G052800--Sobic010G009700 Sobic009G136000 Sobic009G136000 Sobic002G052800--Sobic009G136000 Sobic002G173400 Sobic002G173400 Sobic002G052800--Sobic002G173400 Sobic002G052800--Sobic005G060100 Sobic008G140600 Sobic008G140600 Sobic002G052800--Sobic008G140600 Sobic008G131900 Sobic008G131900 Sobic002G052800--Sobic008G131900 Sobic002G052800--Sobic003G301800 Sobic002G052800--Sobic009G168100 Sobic006G119900--Sobic007G105700 Sobic001G076600 Sobic001G076600 Sobic006G119900--Sobic001G076600 Sobic006G119900--Sobic006G189000 Sobic006G119900--Sobic005G060100 Sobic001G385300 Sobic001G385300 Sobic006G119900--Sobic001G385300 Sobic010G274800 Sobic010G274800 Sobic006G119900--Sobic010G274800 Sobic008G085950 Sobic008G085950 Sobic006G119900--Sobic008G085950 Sobic003G004800 Sobic003G004800 Sobic006G119900--Sobic003G004800 Sobic006G156400 Sobic006G156400 Sobic006G119900--Sobic006G156400 Sobic006G189000--Sobic001G385300 Sobic006G189000--Sobic001G076600 Sobic003G376900 Sobic003G376900 Sobic006G189000--Sobic003G376900 Sobic001G131900 Sobic001G131900 Sobic006G189000--Sobic001G131900 Sobic003G352900 Sobic003G352900 Sobic006G189000--Sobic003G352900 Sobic004G298600 Sobic004G298600 Sobic006G189000--Sobic004G298600 Sobic006G189000--Sobic010G009700 Sobic005G045800 Sobic005G045800 Sobic006G189000--Sobic005G045800 Sobic001G380700 Sobic001G380700 Sobic006G189000--Sobic001G380700 Sobic010G009700--Sobic004G298600 Sobic010G009700--Sobic001G131900 Sobic010G009700--Sobic010G038200 Sobic010G009700--Sobic006G189000 Sobic010G009700--Sobic005G060100 Sobic009G054400 Sobic009G054400 Sobic010G009700--Sobic009G054400 Sobic002G322700 Sobic002G322700 Sobic010G009700--Sobic002G322700 Sobic010G009700--Sobic002G151500 Sobic007G102300 Sobic007G102300 Sobic010G009700--Sobic007G102300 Sobic002G151500--Sobic001G131900 Sobic004G313400 Sobic004G313400 Sobic002G151500--Sobic004G313400 Sobic002G151500--Sobic010G009700 Sobic003G377300 Sobic003G377300 Sobic002G151500--Sobic003G377300 Sobic002G151500--Sobic003G352900 Sobic007G144100 Sobic007G144100 Sobic002G151500--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic002G151500--Sobic003G258100 Sobic002G151500--Sobic005G045800 Sobic002G151500--Sobic004G298600 Sobic002G392400 Sobic002G392400 Sobic007G105700--Sobic002G392400 Sobic002G308000 Sobic002G308000 Sobic007G105700--Sobic002G308000 Sobic007G105700--Sobic005G060100 Sobic001G433600 Sobic001G433600 Sobic007G105700--Sobic001G433600 Sobic007G105700--Sobic001G385300 Sobic001G308500 Sobic001G308500 Sobic007G105700--Sobic001G308500 Sobic007G105700--Sobic004G298600 Sobic007G105700--Sobic008G085950 Sobic001G117900 Sobic001G117900 Sobic007G105700--Sobic001G117900 Sobic005G060100--Sobic007G105700 Sobic005G060100--Sobic007G102300 Sobic005G060100--Sobic001G385300 Sobic003G216600 Sobic003G216600 Sobic005G060100--Sobic003G216600 Sobic005G060100--Sobic001G433600 Sobic005G060100--Sobic004G298600 Sobic005G060100--Sobic001G117900 Sobic005G060100--Sobic003G352900 Sobic005G060100--Sobic001G131900 Sobic009G168100--Sobic008G140600 Sobic001G359000 Sobic001G359000 Sobic009G168100--Sobic001G359000 Sobic009G168100--Sobic005G045800 Sobic008G073500 Sobic008G073500 Sobic009G168100--Sobic008G073500 Sobic010G090000 Sobic010G090000 Sobic009G168100--Sobic010G090000 Sobic009G168100--Sobic003G376900 Sobic009G168100--Sobic003G377300 Sobic003G177600 Sobic003G177600 Sobic009G168100--Sobic003G177600 Sobic009G168100--Sobic001G385300 Sobic009G125800--Sobic009G136000 Sobic004G117400 Sobic004G117400 Sobic009G125800--Sobic004G117400 Sobic001G082800 Sobic001G082800 Sobic009G125800--Sobic001G082800 Sobic009G131200 Sobic009G131200 Sobic009G125800--Sobic009G131200 Sobic002G390800 Sobic002G390800 Sobic009G125800--Sobic002G390800 Sobic009G125800--Sobic010G009700 Sobic007G146200 Sobic007G146200 Sobic009G125800--Sobic007G146200 Sobic008G188800 Sobic008G188800 Sobic009G125800--Sobic008G188800 Sobic009G214500 Sobic009G214500 Sobic009G125800--Sobic009G214500
Octagon: transcription factors


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