Gene annotation
Transcriptome id Sobic.006G119900.2,Sobic.006G119900.1
Synonym Sb06g020065
Functional annotation zinc finger, ZZ type family protein, expressed
UniProt A0A1B6PLK6 , A0A1B6PLL0
Pfam PF16158 PF00569 PF00564 PF00564 PF00569 PF16158
Panther DB PTHR20930:SF3 PTHR20930 PTHR20930 PTHR20930:SF3
NCBI CDD -
KEGG Orthology K17987; next to BRCA1 gene 1 protein
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding GO:0005515protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G24690 : ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
RAP-DB (Rice) LOC_Os02g38050.3,LOC_Os02g38050.2 : joka2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G082590.8 , HORVU2Hr1G082590.9 , HORVU2Hr1G082590.1 , HORVU2Hr1G082590.2 , HORVU2Hr1G082590.3 , HORVU2Hr1G082590.4 , HORVU2Hr1G082590.5 , HORVU2Hr1G082590.6 , HORVU2Hr1G082590.7 , HORVU2Hr1G082590.20 , HORVU2Hr1G082590.10 , HORVU2Hr1G082590.12 , HORVU2Hr1G082590.13 , HORVU2Hr1G082590.11 , HORVU2Hr1G082590.16 , HORVU2Hr1G082590.17 , HORVU2Hr1G082590.18 , HORVU2Hr1G082590.19 , HORVU2Hr1G082590.15 , HORVU6Hr1G053250.1 , HORVU6Hr1G053250.2
Wheat TraesCS6A02G208300 , TraesCS2A02G327000 , TraesCS2A02G327000 , TraesCS2A02G327000 , TraesCS2A02G327000 , TraesCS2A02G327000 , TraesCS2A02G327000 , TraesCS2A02G327000 , TraesCS2B02G355000 , TraesCS2B02G355000 , TraesCS2B02G355000 , TraesCS2B02G355000 , TraesCS2B02G355000 , TraesCS2B02G355000 , TraesCS2B02G355000 , TraesCS6B02G236800 , TraesCS6B02G236800 , TraesCS6B02G236800 , TraesCS2D02G335900 , TraesCS2D02G335900 , TraesCS2D02G335900 , TraesCS2D02G335900 , TraesCS2D02G335900 , TraesCS6D02G191900 , TraesCS6D02G191900 , TraesCS6D02G191900 , TraesCS6A02G208300 , TraesCS6A02G208300
Populus -


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cDNA sequences
Sobic.006G119900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
3 Sobic.006G189000 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
4 Sobic.005G060100 growth regulator related protein, putative, expressed -
5 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
6 Sobic.010G274800 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
7 Sobic.008G085950 - -
8 Sobic.003G004800 ATP binding protein, putative, expressed -
9 Sobic.006G156400 double-stranded RNA binding motif containing protein, expressed K18998: RNA polymerase II C-terminal domain phosphatase-like 1/2
10 Sobic.006G012300 3-5 exonuclease domain-containing protein, putative, expressed -
11 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
12 Sobic.002G313100 STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08838: serine/threonine-protein kinase 24/25/MST4
13 Sobic.009G040325 - -
14 Sobic.002G239400 OsFBX338 - F-box domain containing protein, expressed -
15 Sobic.003G258100 dynamin family protein, putative, expressed -
16 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
17 Sobic.009G040250 - -
18 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
19 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
20 Sobic.007G141600 ZOS8-05 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic006G119900 Sobic006G119900 Sobic007G105700 Sobic007G105700 Sobic006G119900--Sobic007G105700 Sobic001G076600 Sobic001G076600 Sobic006G119900--Sobic001G076600 Sobic006G189000 Sobic006G189000 Sobic006G119900--Sobic006G189000 Sobic005G060100 Sobic005G060100 Sobic006G119900--Sobic005G060100 Sobic001G385300 Sobic001G385300 Sobic006G119900--Sobic001G385300 Sobic010G274800 Sobic010G274800 Sobic006G119900--Sobic010G274800 Sobic008G085950 Sobic008G085950 Sobic006G119900--Sobic008G085950 Sobic003G004800 Sobic003G004800 Sobic006G119900--Sobic003G004800 Sobic006G156400 Sobic006G156400 Sobic006G119900--Sobic006G156400 Sobic002G392400 Sobic002G392400 Sobic007G105700--Sobic002G392400 Sobic002G308000 Sobic002G308000 Sobic007G105700--Sobic002G308000 Sobic007G105700--Sobic005G060100 Sobic001G433600 Sobic001G433600 Sobic007G105700--Sobic001G433600 Sobic007G105700--Sobic001G385300 Sobic001G308500 Sobic001G308500 Sobic007G105700--Sobic001G308500 Sobic004G298600 Sobic004G298600 Sobic007G105700--Sobic004G298600 Sobic007G105700--Sobic008G085950 Sobic001G117900 Sobic001G117900 Sobic007G105700--Sobic001G117900 Sobic003G352900 Sobic003G352900 Sobic001G076600--Sobic003G352900 Sobic007G144100 Sobic007G144100 Sobic001G076600--Sobic007G144100 Sobic008G166100 Sobic008G166100 Sobic001G076600--Sobic008G166100 Sobic004G038400 Sobic004G038400 Sobic001G076600--Sobic004G038400 Sobic002G299500 Sobic002G299500 Sobic001G076600--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic001G076600--Sobic004G045632 Sobic003G258100 Sobic003G258100 Sobic001G076600--Sobic003G258100 Sobic005G173700 Sobic005G173700 Sobic001G076600--Sobic005G173700 Sobic003G376900 Sobic003G376900 Sobic001G076600--Sobic003G376900 Sobic006G189000--Sobic001G385300 Sobic006G189000--Sobic001G076600 Sobic006G189000--Sobic003G376900 Sobic001G131900 Sobic001G131900 Sobic006G189000--Sobic001G131900 Sobic006G189000--Sobic003G352900 Sobic006G189000--Sobic004G298600 Sobic010G009700 Sobic010G009700 Sobic006G189000--Sobic010G009700 Sobic005G045800 Sobic005G045800 Sobic006G189000--Sobic005G045800 Sobic001G380700 Sobic001G380700 Sobic006G189000--Sobic001G380700 Sobic005G060100--Sobic007G105700 Sobic007G102300 Sobic007G102300 Sobic005G060100--Sobic007G102300 Sobic005G060100--Sobic001G385300 Sobic003G216600 Sobic003G216600 Sobic005G060100--Sobic003G216600 Sobic005G060100--Sobic001G433600 Sobic005G060100--Sobic004G298600 Sobic005G060100--Sobic001G117900 Sobic005G060100--Sobic003G352900 Sobic005G060100--Sobic001G131900 Sobic001G385300--Sobic003G376900 Sobic001G385300--Sobic002G299500 Sobic001G385300--Sobic003G352900 Sobic009G163100 Sobic009G163100 Sobic001G385300--Sobic009G163100 Sobic008G171900 Sobic008G171900 Sobic001G385300--Sobic008G171900 Sobic001G385300--Sobic005G045800 Sobic007G141600 Sobic007G141600 Sobic001G385300--Sobic007G141600 Sobic005G020600 Sobic005G020600 Sobic001G385300--Sobic005G020600 Sobic001G385300--Sobic004G298600 Sobic010G274800--Sobic001G308500 Sobic009G046900 Sobic009G046900 Sobic010G274800--Sobic009G046900 Sobic001G149000 Sobic001G149000 Sobic010G274800--Sobic001G149000 Sobic003G428000 Sobic003G428000 Sobic010G274800--Sobic003G428000 Sobic004G194400 Sobic004G194400 Sobic010G274800--Sobic004G194400 Sobic006G265800 Sobic006G265800 Sobic010G274800--Sobic006G265800 Sobic006G071362 Sobic006G071362 Sobic010G274800--Sobic006G071362 Sobic010G086300 Sobic010G086300 Sobic010G274800--Sobic010G086300 Sobic006G134500 Sobic006G134500 Sobic010G274800--Sobic006G134500 Sobic008G085950--Sobic001G308500 Sobic007G043700 Sobic007G043700 Sobic008G085950--Sobic007G043700 Sobic007G102000 Sobic007G102000 Sobic008G085950--Sobic007G102000 Sobic008G085950--Sobic007G105700 Sobic003G194800 Sobic003G194800 Sobic008G085950--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic008G085950--Sobic008G047500 Sobic008G085950--Sobic001G385300 Sobic001G327100 Sobic001G327100 Sobic008G085950--Sobic001G327100 Sobic008G085950--Sobic005G060100 Sobic007G086600 Sobic007G086600 Sobic003G004800--Sobic007G086600 Sobic003G004800--Sobic006G265800 Sobic003G004800--Sobic001G385300 Sobic003G004800--Sobic001G076600 Sobic003G293400 Sobic003G293400 Sobic003G004800--Sobic003G293400 Sobic010G153400 Sobic010G153400 Sobic003G004800--Sobic010G153400 Sobic003G004800--Sobic001G308500 Sobic003G004800--Sobic001G117900 Sobic003G004800--Sobic005G060100 Sobic009G201000 Sobic009G201000 Sobic006G156400--Sobic009G201000 Sobic008G141100 Sobic008G141100 Sobic006G156400--Sobic008G141100 Sobic009G178400 Sobic009G178400 Sobic006G156400--Sobic009G178400 Sobic009G121200 Sobic009G121200 Sobic006G156400--Sobic009G121200 Sobic009G202000 Sobic009G202000 Sobic006G156400--Sobic009G202000 Sobic005G048500 Sobic005G048500 Sobic006G156400--Sobic005G048500 Sobic001G387300 Sobic001G387300 Sobic006G156400--Sobic001G387300 Sobic001G073700 Sobic001G073700 Sobic006G156400--Sobic001G073700 Sobic009G113500 Sobic009G113500 Sobic006G156400--Sobic009G113500
Octagon: transcription factors


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