Gene annotation
Transcriptome id Sobic.006G012300.1
Synonym WRNEXO, ATWRNEXO, WEX, Sb06g001220, ATWEX
Functional annotation 3-5 exonuclease domain-containing protein, putative, expressed
UniProt C5YBT8
Pfam PF01612
Panther DB PTHR13620
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G13870 : Werner syndrome-like exonuclease
RAP-DB (Rice) LOC_Os04g03990.1 : 3-5 exonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a012255
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040250 - -
2 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
3 Sobic.003G420400 - -
4 Sobic.006G119900 zinc finger, ZZ type family protein, expressed K17987: next to BRCA1 gene 1 protein
5 Sobic.010G274800 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
6 Sobic.009G040325 - -
7 Sobic.002G392400 expressed protein -
8 Sobic.006G220400 exonuclease, putative, expressed -
9 Sobic.005G087300 protein kinase family protein, putative, expressed -
10 Sobic.006G191000 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
11 Sobic.003G004800 ATP binding protein, putative, expressed -
12 Sobic.001G043200 expressed protein -
13 Sobic.002G313100 STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08838: serine/threonine-protein kinase 24/25/MST4
14 Sobic.001G229300 expressed protein -
15 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
16 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
17 Sobic.001G152700 expressed protein -
18 Sobic.003G194800 EF hand family protein, putative, expressed -
19 Sobic.002G147200 esterase/lipase/thioesterase, putative, expressed -
20 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -


Gene co-expression network
sample Sobic006G012300 Sobic006G012300 Sobic009G040250 Sobic009G040250 Sobic006G012300--Sobic009G040250 Sobic007G105700 Sobic007G105700 Sobic006G012300--Sobic007G105700 Sobic003G420400 Sobic003G420400 Sobic006G012300--Sobic003G420400 Sobic006G119900 Sobic006G119900 Sobic006G012300--Sobic006G119900 Sobic010G274800 Sobic010G274800 Sobic006G012300--Sobic010G274800 Sobic009G040325 Sobic009G040325 Sobic006G012300--Sobic009G040325 Sobic002G392400 Sobic002G392400 Sobic006G012300--Sobic002G392400 Sobic006G220400 Sobic006G220400 Sobic006G012300--Sobic006G220400 Sobic005G087300 Sobic005G087300 Sobic006G012300--Sobic005G087300 Sobic009G040250--Sobic009G040325 Sobic009G040250--Sobic005G087300 Sobic003G021600 Sobic003G021600 Sobic009G040250--Sobic003G021600 Sobic009G040250--Sobic006G012300 Sobic002G147200 Sobic002G147200 Sobic009G040250--Sobic002G147200 Sobic010G160300 Sobic010G160300 Sobic009G040250--Sobic010G160300 Sobic001G043200 Sobic001G043200 Sobic009G040250--Sobic001G043200 Sobic002G304700 Sobic002G304700 Sobic009G040250--Sobic002G304700 Sobic006G191000 Sobic006G191000 Sobic009G040250--Sobic006G191000 Sobic007G105700--Sobic002G392400 Sobic002G308000 Sobic002G308000 Sobic007G105700--Sobic002G308000 Sobic005G060100 Sobic005G060100 Sobic007G105700--Sobic005G060100 Sobic001G433600 Sobic001G433600 Sobic007G105700--Sobic001G433600 Sobic001G385300 Sobic001G385300 Sobic007G105700--Sobic001G385300 Sobic001G308500 Sobic001G308500 Sobic007G105700--Sobic001G308500 Sobic004G298600 Sobic004G298600 Sobic007G105700--Sobic004G298600 Sobic008G085950 Sobic008G085950 Sobic007G105700--Sobic008G085950 Sobic001G117900 Sobic001G117900 Sobic007G105700--Sobic001G117900 Sobic003G194800 Sobic003G194800 Sobic003G420400--Sobic003G194800 Sobic003G420400--Sobic006G012300 Sobic003G420400--Sobic009G040250 Sobic003G420400--Sobic009G040325 Sobic003G420400--Sobic003G021600 Sobic007G122700 Sobic007G122700 Sobic003G420400--Sobic007G122700 Sobic003G420400--Sobic002G147200 Sobic003G420400--Sobic006G119900 Sobic003G420400--Sobic010G274800 Sobic006G119900--Sobic007G105700 Sobic001G076600 Sobic001G076600 Sobic006G119900--Sobic001G076600 Sobic006G189000 Sobic006G189000 Sobic006G119900--Sobic006G189000 Sobic006G119900--Sobic005G060100 Sobic006G119900--Sobic001G385300 Sobic006G119900--Sobic010G274800 Sobic006G119900--Sobic008G085950 Sobic003G004800 Sobic003G004800 Sobic006G119900--Sobic003G004800 Sobic006G156400 Sobic006G156400 Sobic006G119900--Sobic006G156400 Sobic010G274800--Sobic001G308500 Sobic009G046900 Sobic009G046900 Sobic010G274800--Sobic009G046900 Sobic001G149000 Sobic001G149000 Sobic010G274800--Sobic001G149000 Sobic003G428000 Sobic003G428000 Sobic010G274800--Sobic003G428000 Sobic004G194400 Sobic004G194400 Sobic010G274800--Sobic004G194400 Sobic006G265800 Sobic006G265800 Sobic010G274800--Sobic006G265800 Sobic006G071362 Sobic006G071362 Sobic010G274800--Sobic006G071362 Sobic010G086300 Sobic010G086300 Sobic010G274800--Sobic010G086300 Sobic006G134500 Sobic006G134500 Sobic010G274800--Sobic006G134500 Sobic009G040325--Sobic009G040250 Sobic009G040325--Sobic003G021600 Sobic009G040325--Sobic001G043200 Sobic009G040325--Sobic006G119900 Sobic009G040325--Sobic007G105700 Sobic009G040325--Sobic006G012300 Sobic009G040325--Sobic003G420400 Sobic007G030100 Sobic007G030100 Sobic009G040325--Sobic007G030100 Sobic003G394500 Sobic003G394500 Sobic009G040325--Sobic003G394500 Sobic002G392400--Sobic007G105700 Sobic002G392400--Sobic002G308000 Sobic002G392400--Sobic001G117900 Sobic002G348400 Sobic002G348400 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic003G293400 Sobic003G293400 Sobic002G392400--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G392400--Sobic001G131900 Sobic006G232800 Sobic006G232800 Sobic002G392400--Sobic006G232800 Sobic010G153400 Sobic010G153400 Sobic002G392400--Sobic010G153400 Sobic006G220400--Sobic001G043200 Sobic005G123400 Sobic005G123400 Sobic006G220400--Sobic005G123400 Sobic009G227100 Sobic009G227100 Sobic006G220400--Sobic009G227100 Sobic006G220400--Sobic006G012300 Sobic001G203600 Sobic001G203600 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic007G204000 Sobic007G204000 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic004G334200 Sobic004G334200 Sobic006G220400--Sobic004G334200 Sobic005G087300--Sobic009G040250 Sobic005G087300--Sobic002G313100 Sobic002G066800 Sobic002G066800 Sobic005G087300--Sobic002G066800 Sobic004G198300 Sobic004G198300 Sobic005G087300--Sobic004G198300 Sobic007G086600 Sobic007G086600 Sobic005G087300--Sobic007G086600 Sobic003G393200 Sobic003G393200 Sobic005G087300--Sobic003G393200 Sobic005G087300--Sobic007G105700 Sobic002G322400 Sobic002G322400 Sobic005G087300--Sobic002G322400 Sobic005G087300--Sobic010G160300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.