Gene annotation
Transcriptome id Sobic.003G194800.4,Sobic.003G194800.1
Synonym Sb03g025800
Functional annotation EF hand family protein, putative, expressed
UniProt C5XNS3
Pfam PF13202 PF13499
Panther DB PTHR10827 PTHR10827:SF53
NCBI CDD KOG4223; Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily)
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G08580 : Calcium-binding EF hand family protein
RAP-DB (Rice) LOC_Os01g39134.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a038399
Brachypodium KQK08380
Barley HORVU3Hr1G049820.13 , HORVU3Hr1G049820.16 , HORVU3Hr1G049820.14 , HORVU3Hr1G049820.15 , HORVU3Hr1G049820.7
Wheat TraesCS3A02G205700 , TraesCS3A02G205700 , TraesCS3A02G205700 , TraesCS3D02G209900 , TraesCS3D02G209900 , TraesCS3B02G237600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G085950 - -
2 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.009G120400 methyltransferase, putative, expressed -
4 Sobic.003G204100 expressed protein -
5 Sobic.002G173400 expressed protein -
6 Sobic.003G299500 expressed protein -
7 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
8 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
9 Sobic.003G420400 - -
10 Sobic.005G123400 expressed protein -
11 Sobic.001G043200 expressed protein -
12 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
13 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
14 Sobic.001G433600 - -
15 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
16 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.009G054400 ECT protein, putative, expressed -
18 Sobic.005G060100 growth regulator related protein, putative, expressed -
19 Sobic.003G368400 sterol 3-beta-glucosyltransferase, putative, expressed K05841: sterol 3beta-glucosyltransferase
20 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -


Gene co-expression network
sample Sobic003G194800 Sobic003G194800 Sobic008G085950 Sobic008G085950 Sobic003G194800--Sobic008G085950 Sobic008G047500 Sobic008G047500 Sobic003G194800--Sobic008G047500 Sobic009G120400 Sobic009G120400 Sobic003G194800--Sobic009G120400 Sobic003G204100 Sobic003G204100 Sobic003G194800--Sobic003G204100 Sobic002G173400 Sobic002G173400 Sobic003G194800--Sobic002G173400 Sobic003G299500 Sobic003G299500 Sobic003G194800--Sobic003G299500 Sobic007G105700 Sobic007G105700 Sobic003G194800--Sobic007G105700 Sobic004G215600 Sobic004G215600 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic001G308500 Sobic001G308500 Sobic008G085950--Sobic001G308500 Sobic007G043700 Sobic007G043700 Sobic008G085950--Sobic007G043700 Sobic007G102000 Sobic007G102000 Sobic008G085950--Sobic007G102000 Sobic008G085950--Sobic007G105700 Sobic008G085950--Sobic003G194800 Sobic008G085950--Sobic008G047500 Sobic001G385300 Sobic001G385300 Sobic008G085950--Sobic001G385300 Sobic001G327100 Sobic001G327100 Sobic008G085950--Sobic001G327100 Sobic005G060100 Sobic005G060100 Sobic008G085950--Sobic005G060100 Sobic008G047500--Sobic008G085950 Sobic008G047500--Sobic003G204100 Sobic008G047500--Sobic003G194800 Sobic008G047500--Sobic007G102000 Sobic002G390800 Sobic002G390800 Sobic008G047500--Sobic002G390800 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic008G047500--Sobic007G105700 Sobic010G009700 Sobic010G009700 Sobic008G047500--Sobic010G009700 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic007G034200 Sobic007G034200 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic009G120400--Sobic004G215600 Sobic009G120400--Sobic007G105700 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400 Sobic003G204100--Sobic008G047500 Sobic003G204100--Sobic003G194800 Sobic003G045450 Sobic003G045450 Sobic003G204100--Sobic003G045450 Sobic003G204100--Sobic004G298600 Sobic003G204100--Sobic008G085950 Sobic003G204100--Sobic002G173400 Sobic010G143600 Sobic010G143600 Sobic003G204100--Sobic010G143600 Sobic001G117900 Sobic001G117900 Sobic003G204100--Sobic001G117900 Sobic003G204100--Sobic007G102000 Sobic008G131900 Sobic008G131900 Sobic002G173400--Sobic008G131900 Sobic002G173400--Sobic009G120400 Sobic002G173400--Sobic003G194800 Sobic002G173400--Sobic008G047500 Sobic002G052800 Sobic002G052800 Sobic002G173400--Sobic002G052800 Sobic010G038200 Sobic010G038200 Sobic002G173400--Sobic010G038200 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic002G173400--Sobic005G060100 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic003G299500--Sobic004G106250 Sobic003G299500--Sobic009G120400 Sobic003G016500 Sobic003G016500 Sobic003G299500--Sobic003G016500 Sobic001G123600 Sobic001G123600 Sobic003G299500--Sobic001G123600 Sobic006G245900 Sobic006G245900 Sobic003G299500--Sobic006G245900 Sobic002G235900 Sobic002G235900 Sobic003G299500--Sobic002G235900 Sobic006G191200 Sobic006G191200 Sobic003G299500--Sobic006G191200 Sobic002G392400 Sobic002G392400 Sobic007G105700--Sobic002G392400 Sobic002G308000 Sobic002G308000 Sobic007G105700--Sobic002G308000 Sobic007G105700--Sobic005G060100 Sobic001G433600 Sobic001G433600 Sobic007G105700--Sobic001G433600 Sobic007G105700--Sobic001G385300 Sobic007G105700--Sobic001G308500 Sobic007G105700--Sobic004G298600 Sobic007G105700--Sobic008G085950 Sobic007G105700--Sobic001G117900 Sobic004G215600--Sobic009G120400 Sobic004G215600--Sobic003G194800 Sobic004G215600--Sobic008G047500 Sobic004G215600--Sobic007G186400 Sobic008G095900 Sobic008G095900 Sobic004G215600--Sobic008G095900 Sobic006G095000 Sobic006G095000 Sobic004G215600--Sobic006G095000 Sobic004G215600--Sobic008G085950 Sobic004G215600--Sobic002G173400 Sobic001G043200 Sobic001G043200 Sobic004G215600--Sobic001G043200 Sobic003G420400--Sobic003G194800 Sobic006G012300 Sobic006G012300 Sobic003G420400--Sobic006G012300 Sobic009G040250 Sobic009G040250 Sobic003G420400--Sobic009G040250 Sobic009G040325 Sobic009G040325 Sobic003G420400--Sobic009G040325 Sobic003G021600 Sobic003G021600 Sobic003G420400--Sobic003G021600 Sobic007G122700 Sobic007G122700 Sobic003G420400--Sobic007G122700 Sobic002G147200 Sobic002G147200 Sobic003G420400--Sobic002G147200 Sobic006G119900 Sobic006G119900 Sobic003G420400--Sobic006G119900 Sobic010G274800 Sobic010G274800 Sobic003G420400--Sobic010G274800
Octagon: transcription factors


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