Gene annotation
Transcriptome id Sobic.008G047500.5,Sobic.008G047500.4,Sobic.008G047500.1,Sobic.008G047500.3,Sobic.008G047500.2
Synonym Sb08g004010
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5R4S9 , A0A1Z5R5Y0 , A0A1B6PC26 , A0A1Z5R5R3
Pfam PF12872 PF01936 PF01936 PF12872
Panther DB PTHR14379 PTHR14379:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0010468; regulation of gene expression GO:0005777peroxisome


Orthologs (automatic annotation)
TAIR AT5G09840 : Putative endonuclease or glycosyl hydrolase
RAP-DB (Rice) LOC_Os12g06560.1 : expressed protein
MaizeGDB (Corn) Zm00025a025781
Brachypodium PNT65401 , KQJ92124 , KQJ92125
Barley HORVU7Hr1G053070.2 , HORVU7Hr1G053070.3 , HORVU7Hr1G053070.4 , HORVU7Hr1G053070.5 , HORVU7Hr1G053070.6 , HORVU7Hr1G053070.7 , HORVU7Hr1G053070.8 , HORVU7Hr1G053070.9 , HORVU7Hr1G053070.12 , HORVU7Hr1G053070.10 , HORVU7Hr1G053070.11 , HORVU7Hr1G053070.1
Wheat TraesCS5B02G123300 , TraesCS5A02G123700 , TraesCS5D02G131600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G085950 - -
2 Sobic.003G204100 expressed protein -
3 Sobic.003G194800 EF hand family protein, putative, expressed -
4 Sobic.007G102000 formin-like protein 13, putative, expressed -
5 Sobic.002G390800 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
6 Sobic.002G173400 expressed protein -
7 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
8 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
9 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
10 Sobic.005G060100 growth regulator related protein, putative, expressed -
11 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
12 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
13 Sobic.009G054400 ECT protein, putative, expressed -
14 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
15 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
16 Sobic.001G327100 OsFBX157 - F-box domain containing protein, expressed -
17 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G433600 - -
19 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2


Gene co-expression network
sample Sobic008G047500 Sobic008G047500 Sobic008G085950 Sobic008G085950 Sobic008G047500--Sobic008G085950 Sobic003G204100 Sobic003G204100 Sobic008G047500--Sobic003G204100 Sobic003G194800 Sobic003G194800 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic002G390800 Sobic002G390800 Sobic008G047500--Sobic002G390800 Sobic002G173400 Sobic002G173400 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic007G105700 Sobic007G105700 Sobic008G047500--Sobic007G105700 Sobic010G009700 Sobic010G009700 Sobic008G047500--Sobic010G009700 Sobic001G308500 Sobic001G308500 Sobic008G085950--Sobic001G308500 Sobic007G043700 Sobic007G043700 Sobic008G085950--Sobic007G043700 Sobic008G085950--Sobic007G102000 Sobic008G085950--Sobic007G105700 Sobic008G085950--Sobic003G194800 Sobic008G085950--Sobic008G047500 Sobic001G385300 Sobic001G385300 Sobic008G085950--Sobic001G385300 Sobic001G327100 Sobic001G327100 Sobic008G085950--Sobic001G327100 Sobic005G060100 Sobic005G060100 Sobic008G085950--Sobic005G060100 Sobic003G204100--Sobic008G047500 Sobic003G204100--Sobic003G194800 Sobic003G045450 Sobic003G045450 Sobic003G204100--Sobic003G045450 Sobic003G204100--Sobic004G298600 Sobic003G204100--Sobic008G085950 Sobic003G204100--Sobic002G173400 Sobic010G143600 Sobic010G143600 Sobic003G204100--Sobic010G143600 Sobic001G117900 Sobic001G117900 Sobic003G204100--Sobic001G117900 Sobic003G204100--Sobic007G102000 Sobic003G194800--Sobic008G085950 Sobic003G194800--Sobic008G047500 Sobic009G120400 Sobic009G120400 Sobic003G194800--Sobic009G120400 Sobic003G194800--Sobic003G204100 Sobic003G194800--Sobic002G173400 Sobic003G299500 Sobic003G299500 Sobic003G194800--Sobic003G299500 Sobic003G194800--Sobic007G105700 Sobic004G215600 Sobic004G215600 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic009G214500 Sobic009G214500 Sobic007G102000--Sobic009G214500 Sobic007G102000--Sobic008G085950 Sobic008G073500 Sobic008G073500 Sobic007G102000--Sobic008G073500 Sobic004G241300 Sobic004G241300 Sobic007G102000--Sobic004G241300 Sobic007G102000--Sobic002G390800 Sobic007G102000--Sobic001G385300 Sobic007G102000--Sobic004G298600 Sobic007G102300 Sobic007G102300 Sobic007G102000--Sobic007G102300 Sobic007G102000--Sobic007G105700 Sobic001G082800 Sobic001G082800 Sobic002G390800--Sobic001G082800 Sobic002G390800--Sobic007G102000 Sobic009G125800 Sobic009G125800 Sobic002G390800--Sobic009G125800 Sobic002G390800--Sobic008G047500 Sobic002G192900 Sobic002G192900 Sobic002G390800--Sobic002G192900 Sobic009G136000 Sobic009G136000 Sobic002G390800--Sobic009G136000 Sobic008G004900 Sobic008G004900 Sobic002G390800--Sobic008G004900 Sobic001G248400 Sobic001G248400 Sobic002G390800--Sobic001G248400 Sobic010G038200 Sobic010G038200 Sobic002G390800--Sobic010G038200 Sobic008G131900 Sobic008G131900 Sobic002G173400--Sobic008G131900 Sobic002G173400--Sobic009G120400 Sobic002G173400--Sobic003G194800 Sobic002G173400--Sobic008G047500 Sobic002G052800 Sobic002G052800 Sobic002G173400--Sobic002G052800 Sobic002G173400--Sobic010G038200 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic002G173400--Sobic005G060100 Sobic004G298600--Sobic001G385300 Sobic001G131900 Sobic001G131900 Sobic004G298600--Sobic001G131900 Sobic003G293400 Sobic003G293400 Sobic004G298600--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G298600--Sobic004G026600 Sobic004G298600--Sobic005G060100 Sobic004G298600--Sobic001G308500 Sobic001G433600 Sobic001G433600 Sobic004G298600--Sobic001G433600 Sobic004G298600--Sobic007G105700 Sobic003G352900 Sobic003G352900 Sobic004G298600--Sobic003G352900 Sobic002G392400 Sobic002G392400 Sobic007G105700--Sobic002G392400 Sobic002G308000 Sobic002G308000 Sobic007G105700--Sobic002G308000 Sobic007G105700--Sobic005G060100 Sobic007G105700--Sobic001G433600 Sobic007G105700--Sobic001G385300 Sobic007G105700--Sobic001G308500 Sobic007G105700--Sobic004G298600 Sobic007G105700--Sobic008G085950 Sobic007G105700--Sobic001G117900 Sobic010G009700--Sobic004G298600 Sobic010G009700--Sobic001G131900 Sobic010G009700--Sobic010G038200 Sobic006G189000 Sobic006G189000 Sobic010G009700--Sobic006G189000 Sobic010G009700--Sobic005G060100 Sobic009G054400 Sobic009G054400 Sobic010G009700--Sobic009G054400 Sobic002G322700 Sobic002G322700 Sobic010G009700--Sobic002G322700 Sobic002G151500 Sobic002G151500 Sobic010G009700--Sobic002G151500 Sobic010G009700--Sobic007G102300
Octagon: transcription factors


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