Gene annotation
Transcriptome id Sobic.002G078100.1
Synonym PPR596, Sb02g006520
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1W0W2X8
Pfam PF01535 PF13812
Panther DB PTHR24015 PTHR24015:SF758
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80270 : PENTATRICOPEPTIDE REPEAT 596
RAP-DB (Rice) LOC_Os07g12140.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045413
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
2 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
3 Sobic.009G120400 methyltransferase, putative, expressed -
4 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
6 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
7 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
8 Sobic.003G194800 EF hand family protein, putative, expressed -
9 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
10 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
11 Sobic.003G204100 expressed protein -
12 Sobic.002G043000 HEN1, putative, expressed -
13 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.003G183466 - -
15 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
16 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
17 Sobic.002G173400 expressed protein -
18 Sobic.001G229300 expressed protein -
19 Sobic.002G363800 expressed protein -
20 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3


Gene co-expression network
sample Sobic002G078100 Sobic002G078100 Sobic002G066800 Sobic002G066800 Sobic002G078100--Sobic002G066800 Sobic002G426100 Sobic002G426100 Sobic002G078100--Sobic002G426100 Sobic009G120400 Sobic009G120400 Sobic002G078100--Sobic009G120400 Sobic008G047500 Sobic008G047500 Sobic002G078100--Sobic008G047500 Sobic006G191200 Sobic006G191200 Sobic002G078100--Sobic006G191200 Sobic001G051400 Sobic001G051400 Sobic002G078100--Sobic001G051400 Sobic008G111600 Sobic008G111600 Sobic002G078100--Sobic008G111600 Sobic003G194800 Sobic003G194800 Sobic002G078100--Sobic003G194800 Sobic007G034200 Sobic007G034200 Sobic002G078100--Sobic007G034200 Sobic002G066800--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic002G066800--Sobic005G087300 Sobic002G066800--Sobic002G078100 Sobic003G393200 Sobic003G393200 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic002G426100--Sobic009G120400 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic002G173400 Sobic002G173400 Sobic009G120400--Sobic002G173400 Sobic009G120400--Sobic002G426100 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic003G299500 Sobic003G299500 Sobic009G120400--Sobic003G299500 Sobic009G120400--Sobic007G186400 Sobic009G120400--Sobic001G051400 Sobic008G085950 Sobic008G085950 Sobic008G047500--Sobic008G085950 Sobic003G204100 Sobic003G204100 Sobic008G047500--Sobic003G204100 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic002G390800 Sobic002G390800 Sobic008G047500--Sobic002G390800 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic008G047500--Sobic007G105700 Sobic010G009700 Sobic010G009700 Sobic008G047500--Sobic010G009700 Sobic001G123600 Sobic001G123600 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic006G191200--Sobic002G078100 Sobic006G191200--Sobic002G066800 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic001G051400--Sobic002G066800 Sobic001G051400--Sobic007G034200 Sobic001G051400--Sobic003G393200 Sobic001G051400--Sobic003G010900 Sobic001G051400--Sobic009G120400 Sobic001G051400--Sobic006G191200 Sobic001G051400--Sobic005G087300 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic004G215900 Sobic004G215900 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic008G111600--Sobic002G078100 Sobic002G003300 Sobic002G003300 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic003G194800--Sobic008G085950 Sobic003G194800--Sobic008G047500 Sobic003G194800--Sobic009G120400 Sobic003G194800--Sobic003G204100 Sobic003G194800--Sobic002G173400 Sobic003G194800--Sobic003G299500 Sobic003G194800--Sobic007G105700 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic007G034200--Sobic003G299500 Sobic007G034200--Sobic009G120400 Sobic007G034200--Sobic001G051400 Sobic007G034200--Sobic001G123600 Sobic007G034200--Sobic003G194800 Sobic007G034200--Sobic002G386900 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900
Octagon: transcription factors


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