Gene annotation
Transcriptome id Sobic.010G018900.2,Sobic.010G018900.1
Synonym Sb10g001830
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt C5Z388
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF504
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60770 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g25410.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050190
Brachypodium KQK19674
Barley HORVU7Hr1G011310.4 , HORVU7Hr1G011310.3 , HORVU7Hr1G011310.2 , HORVU7Hr1G011310.1
Wheat TraesCS4A02G428500 , TraesCS7D02G056000 , TraesCS7A02G061300
Populus -


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cDNA sequences
Sobic.010G018900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
2 Sobic.010G257500 expressed protein -
3 Sobic.004G007700 pentatricopeptide, putative, expressed -
4 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
5 Sobic.010G038900 expressed protein -
6 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
7 Sobic.010G269800 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed K06640: serine/threonine-protein kinase ATR
8 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
9 Sobic.006G272300 pentatricopeptide, putative, expressed -
10 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
11 Sobic.008G160600 tesmin/TSO1-like CXC domain containing protein, expressed -
12 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
13 Sobic.006G127200 kelch repeat protein, putative, expressed -
14 Sobic.002G322400 OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed -
15 Sobic.001G154200 IQ calmodulin-binding motif domain containing protein, expressed -
16 Sobic.002G392400 expressed protein -
17 Sobic.004G198300 expressed protein -
18 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
19 Sobic.004G306100 expressed protein -
20 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G018900 Sobic010G018900 Sobic002G308000 Sobic002G308000 Sobic010G018900--Sobic002G308000 Sobic010G257500 Sobic010G257500 Sobic010G018900--Sobic010G257500 Sobic004G007700 Sobic004G007700 Sobic010G018900--Sobic004G007700 Sobic002G066800 Sobic002G066800 Sobic010G018900--Sobic002G066800 Sobic010G038900 Sobic010G038900 Sobic010G018900--Sobic010G038900 Sobic002G271400 Sobic002G271400 Sobic010G018900--Sobic002G271400 Sobic010G269800 Sobic010G269800 Sobic010G018900--Sobic010G269800 Sobic009G063800 Sobic009G063800 Sobic010G018900--Sobic009G063800 Sobic006G272300 Sobic006G272300 Sobic010G018900--Sobic006G272300 Sobic002G392400 Sobic002G392400 Sobic002G308000--Sobic002G392400 Sobic007G105700 Sobic007G105700 Sobic002G308000--Sobic007G105700 Sobic001G117900 Sobic001G117900 Sobic002G308000--Sobic001G117900 Sobic001G433600 Sobic001G433600 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic010G253200 Sobic010G253200 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G192900 Sobic002G192900 Sobic002G308000--Sobic002G192900 Sobic010G009600 Sobic010G009600 Sobic010G257500--Sobic010G009600 Sobic003G343200 Sobic003G343200 Sobic010G257500--Sobic003G343200 Sobic001G534400 Sobic001G534400 Sobic010G257500--Sobic001G534400 Sobic006G127200 Sobic006G127200 Sobic010G257500--Sobic006G127200 Sobic010G013400 Sobic010G013400 Sobic010G257500--Sobic010G013400 Sobic010G257500--Sobic010G018900 Sobic010G257500--Sobic002G271400 Sobic004G014100 Sobic004G014100 Sobic010G257500--Sobic004G014100 Sobic010G257500--Sobic010G038900 Sobic004G356300 Sobic004G356300 Sobic004G007700--Sobic004G356300 Sobic004G007700--Sobic010G018900 Sobic001G011000 Sobic001G011000 Sobic004G007700--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G007700--Sobic003G075200 Sobic002G367800 Sobic002G367800 Sobic004G007700--Sobic002G367800 Sobic010G080900 Sobic010G080900 Sobic004G007700--Sobic010G080900 Sobic010G002800 Sobic010G002800 Sobic004G007700--Sobic010G002800 Sobic007G140100 Sobic007G140100 Sobic004G007700--Sobic007G140100 Sobic001G167500 Sobic001G167500 Sobic004G007700--Sobic001G167500 Sobic001G051400 Sobic001G051400 Sobic002G066800--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic002G066800--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic002G066800--Sobic002G078100 Sobic003G393200 Sobic003G393200 Sobic002G066800--Sobic003G393200 Sobic002G066800--Sobic010G038900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic006G191200 Sobic006G191200 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic006G184200 Sobic006G184200 Sobic010G038900--Sobic006G184200 Sobic010G038900--Sobic002G066800 Sobic004G350200 Sobic004G350200 Sobic010G038900--Sobic004G350200 Sobic008G087200 Sobic008G087200 Sobic010G038900--Sobic008G087200 Sobic010G038900--Sobic010G257500 Sobic010G038900--Sobic010G018900 Sobic005G160200 Sobic005G160200 Sobic010G038900--Sobic005G160200 Sobic004G063300 Sobic004G063300 Sobic010G038900--Sobic004G063300 Sobic010G038900--Sobic010G009600 Sobic004G306100 Sobic004G306100 Sobic002G271400--Sobic004G306100 Sobic002G271400--Sobic003G343200 Sobic002G271400--Sobic006G127200 Sobic003G411700 Sobic003G411700 Sobic002G271400--Sobic003G411700 Sobic001G025900 Sobic001G025900 Sobic002G271400--Sobic001G025900 Sobic010G222800 Sobic010G222800 Sobic002G271400--Sobic010G222800 Sobic003G013800 Sobic003G013800 Sobic002G271400--Sobic003G013800 Sobic008G004900 Sobic008G004900 Sobic002G271400--Sobic008G004900 Sobic010G024000 Sobic010G024000 Sobic002G271400--Sobic010G024000 Sobic010G269800--Sobic002G308000 Sobic007G102000 Sobic007G102000 Sobic010G269800--Sobic007G102000 Sobic009G080600 Sobic009G080600 Sobic010G269800--Sobic009G080600 Sobic010G269800--Sobic010G253200 Sobic002G390800 Sobic002G390800 Sobic010G269800--Sobic002G390800 Sobic010G269800--Sobic008G004900 Sobic010G269800--Sobic002G192900 Sobic010G269800--Sobic010G018900 Sobic009G042000 Sobic009G042000 Sobic010G269800--Sobic009G042000 Sobic002G182000 Sobic002G182000 Sobic009G063800--Sobic002G182000 Sobic010G250000 Sobic010G250000 Sobic009G063800--Sobic010G250000 Sobic007G146600 Sobic007G146600 Sobic009G063800--Sobic007G146600 Sobic001G309200 Sobic001G309200 Sobic009G063800--Sobic001G309200 Sobic002G322400 Sobic002G322400 Sobic009G063800--Sobic002G322400 Sobic009G063800--Sobic010G018900 Sobic001G203600 Sobic001G203600 Sobic009G063800--Sobic001G203600 Sobic002G348400 Sobic002G348400 Sobic009G063800--Sobic002G348400 Sobic008G072500 Sobic008G072500 Sobic009G063800--Sobic008G072500 Sobic006G100266 Sobic006G100266 Sobic006G272300--Sobic006G100266 Sobic006G272300--Sobic008G087200 Sobic006G272300--Sobic001G131900 Sobic001G196800 Sobic001G196800 Sobic006G272300--Sobic001G196800 Sobic002G274700 Sobic002G274700 Sobic006G272300--Sobic002G274700 Sobic006G272300--Sobic010G018900 Sobic006G272300--Sobic010G009600 Sobic006G272300--Sobic003G293400 Sobic001G188000 Sobic001G188000 Sobic006G272300--Sobic001G188000
Octagon: transcription factors


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