Gene annotation
Transcriptome id Sobic.002G066800.2,Sobic.002G066800.1
Synonym RNL, Sb02g005590, ATRNL
Functional annotation RNA ligase isoform 1, putative, expressed
UniProt A0A1B6Q9N9 , C5XBZ6
Pfam -
Panther DB PTHR35460 PTHR35460:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07910 : RNAligase
RAP-DB (Rice) LOC_Os07g09400.1 : RNA ligase isoform 1, putative, expressed
MaizeGDB (Corn) Zm00025a045289 , Zm00025a025100
Brachypodium KQK20484
Barley HORVU2Hr1G024610.17 , HORVU2Hr1G024610.16 , HORVU2Hr1G024610.15 , HORVU2Hr1G024610.14 , HORVU2Hr1G024610.13 , HORVU2Hr1G024610.12 , HORVU2Hr1G024610.11 , HORVU2Hr1G024610.10 , HORVU2Hr1G024610.19 , HORVU2Hr1G024610.18 , HORVU2Hr1G024610.9 , HORVU2Hr1G024610.8 , HORVU2Hr1G024610.7 , HORVU2Hr1G024610.6 , HORVU2Hr1G024610.5 , HORVU2Hr1G024610.4 , HORVU2Hr1G024610.3 , HORVU2Hr1G024610.2 , HORVU2Hr1G024610.1 , HORVU2Hr1G024610.22 , HORVU2Hr1G024610.23 , HORVU2Hr1G024610.20 , HORVU2Hr1G024610.21
Wheat TraesCS1B02G479400 , TraesCS2B02G162500 , TraesCS2D02G141500 , TraesCS2D02G141500 , TraesCS2A02G138700
Populus PNS98536 , PNS98537 , PNS98538 , PNS98539


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
2 Sobic.005G087300 protein kinase family protein, putative, expressed -
3 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G393200 expressed protein -
5 Sobic.010G038900 expressed protein -
6 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
7 Sobic.003G010900 expressed protein -
8 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
9 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
10 Sobic.009G120400 methyltransferase, putative, expressed -
11 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
12 Sobic.002G322400 OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed -
13 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
14 Sobic.001G229300 expressed protein -
15 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
16 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
17 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
18 Sobic.003G297700 lipid-A-disaccharide synthase family protein, expressed K00748: lipid-A-disaccharide synthase
19 Sobic.006G198400 phosphoenolpyruvate carboxykinase, putative, expressed -
20 Sobic.003G194800 EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic002G066800 Sobic002G066800 Sobic001G051400 Sobic001G051400 Sobic002G066800--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic002G066800--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic002G066800--Sobic002G078100 Sobic003G393200 Sobic003G393200 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic006G191200 Sobic006G191200 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic001G051400--Sobic002G066800 Sobic007G034200 Sobic007G034200 Sobic001G051400--Sobic007G034200 Sobic001G051400--Sobic003G393200 Sobic001G051400--Sobic003G010900 Sobic009G120400 Sobic009G120400 Sobic001G051400--Sobic009G120400 Sobic001G051400--Sobic006G191200 Sobic001G051400--Sobic005G087300 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic009G040250 Sobic009G040250 Sobic005G087300--Sobic009G040250 Sobic002G313100 Sobic002G313100 Sobic005G087300--Sobic002G313100 Sobic005G087300--Sobic002G066800 Sobic004G198300 Sobic004G198300 Sobic005G087300--Sobic004G198300 Sobic007G086600 Sobic007G086600 Sobic005G087300--Sobic007G086600 Sobic005G087300--Sobic003G393200 Sobic007G105700 Sobic007G105700 Sobic005G087300--Sobic007G105700 Sobic002G322400 Sobic002G322400 Sobic005G087300--Sobic002G322400 Sobic010G160300 Sobic010G160300 Sobic005G087300--Sobic010G160300 Sobic002G078100--Sobic002G066800 Sobic002G426100 Sobic002G426100 Sobic002G078100--Sobic002G426100 Sobic002G078100--Sobic009G120400 Sobic008G047500 Sobic008G047500 Sobic002G078100--Sobic008G047500 Sobic002G078100--Sobic006G191200 Sobic002G078100--Sobic001G051400 Sobic008G111600 Sobic008G111600 Sobic002G078100--Sobic008G111600 Sobic003G194800 Sobic003G194800 Sobic002G078100--Sobic003G194800 Sobic002G078100--Sobic007G034200 Sobic003G190200 Sobic003G190200 Sobic003G393200--Sobic003G190200 Sobic003G393200--Sobic005G123400 Sobic003G393200--Sobic001G051400 Sobic006G237500 Sobic006G237500 Sobic003G393200--Sobic006G237500 Sobic003G393200--Sobic002G066800 Sobic003G393200--Sobic005G087300 Sobic001G043200 Sobic001G043200 Sobic003G393200--Sobic001G043200 Sobic001G343000 Sobic001G343000 Sobic003G393200--Sobic001G343000 Sobic009G059400 Sobic009G059400 Sobic003G393200--Sobic009G059400 Sobic006G184200 Sobic006G184200 Sobic010G038900--Sobic006G184200 Sobic010G038900--Sobic002G066800 Sobic004G350200 Sobic004G350200 Sobic010G038900--Sobic004G350200 Sobic008G087200 Sobic008G087200 Sobic010G038900--Sobic008G087200 Sobic010G257500 Sobic010G257500 Sobic010G038900--Sobic010G257500 Sobic010G038900--Sobic010G018900 Sobic005G160200 Sobic005G160200 Sobic010G038900--Sobic005G160200 Sobic004G063300 Sobic004G063300 Sobic010G038900--Sobic004G063300 Sobic010G009600 Sobic010G009600 Sobic010G038900--Sobic010G009600 Sobic002G308000 Sobic002G308000 Sobic010G018900--Sobic002G308000 Sobic010G018900--Sobic010G257500 Sobic004G007700 Sobic004G007700 Sobic010G018900--Sobic004G007700 Sobic010G018900--Sobic002G066800 Sobic010G018900--Sobic010G038900 Sobic002G271400 Sobic002G271400 Sobic010G018900--Sobic002G271400 Sobic010G269800 Sobic010G269800 Sobic010G018900--Sobic010G269800 Sobic009G063800 Sobic009G063800 Sobic010G018900--Sobic009G063800 Sobic006G272300 Sobic006G272300 Sobic010G018900--Sobic006G272300 Sobic003G010900--Sobic001G051400 Sobic004G145600 Sobic004G145600 Sobic003G010900--Sobic004G145600 Sobic003G010900--Sobic002G066800 Sobic007G016900 Sobic007G016900 Sobic003G010900--Sobic007G016900 Sobic001G123600 Sobic001G123600 Sobic003G010900--Sobic001G123600 Sobic004G084400 Sobic004G084400 Sobic003G010900--Sobic004G084400 Sobic001G229300 Sobic001G229300 Sobic003G010900--Sobic001G229300 Sobic003G432800 Sobic003G432800 Sobic003G010900--Sobic003G432800 Sobic002G381900 Sobic002G381900 Sobic003G010900--Sobic002G381900 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic006G191200--Sobic002G078100 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic003G023200--Sobic002G066800 Sobic006G212900 Sobic006G212900 Sobic003G023200--Sobic006G212900 Sobic010G250000 Sobic010G250000 Sobic003G023200--Sobic010G250000 Sobic003G256800 Sobic003G256800 Sobic003G023200--Sobic003G256800 Sobic001G097900 Sobic001G097900 Sobic003G023200--Sobic001G097900 Sobic003G023200--Sobic005G087300 Sobic003G023200--Sobic002G426100 Sobic003G023200--Sobic001G229300 Sobic007G122700 Sobic007G122700 Sobic003G023200--Sobic007G122700
Octagon: transcription factors


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