Gene annotation
Transcriptome id Sobic.002G296400.1
Synonym Sb02g032760
Functional annotation E3 ubiquitin-protein ligase HERC2, putative, expressed
UniProt C5X8E0
Pfam PF00415
Panther DB PTHR22870 PTHR22870:SF138
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60870 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os09g38755.1 : E3 ubiquitin-protein ligase HERC2, putative, expressed
MaizeGDB (Corn) Zm00025a047875
Brachypodium KQJ91479
Barley HORVU5Hr1G089510.8 , HORVU5Hr1G089510.9 , HORVU5Hr1G089510.6 , HORVU5Hr1G089510.4 , HORVU5Hr1G089510.5 , HORVU5Hr1G089510.2 , HORVU5Hr1G089510.3 , HORVU5Hr1G089510.1 , HORVU5Hr1G089510.7
Wheat TraesCS5D02G373300 , TraesCS5D02G373300 , TraesCS5B02G366300 , TraesCS5B02G366300 , TraesCS5A02G364400 , TraesCS5A02G364400
Populus -


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cDNA sequences
Sobic.002G296400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
2 Sobic.006G245900 FAR1 family protein, expressed -
3 Sobic.002G363800 expressed protein -
4 Sobic.003G113300 expressed protein -
5 Sobic.001G308400 expressed protein -
6 Sobic.009G008200 STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
7 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
8 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
9 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
10 Sobic.003G043000 expressed protein -
11 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
12 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
13 Sobic.001G097900 expressed protein -
14 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
15 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
16 Sobic.005G114500 growth regulator related protein, putative, expressed -
17 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.007G145400 expressed protein -
19 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
20 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1


Gene co-expression network
sample Sobic002G296400 Sobic002G296400 Sobic006G191200 Sobic006G191200 Sobic002G296400--Sobic006G191200 Sobic006G245900 Sobic006G245900 Sobic002G296400--Sobic006G245900 Sobic002G363800 Sobic002G363800 Sobic002G296400--Sobic002G363800 Sobic003G113300 Sobic003G113300 Sobic002G296400--Sobic003G113300 Sobic001G308400 Sobic001G308400 Sobic002G296400--Sobic001G308400 Sobic009G008200 Sobic009G008200 Sobic002G296400--Sobic009G008200 Sobic003G256800 Sobic003G256800 Sobic002G296400--Sobic003G256800 Sobic002G066800 Sobic002G066800 Sobic002G296400--Sobic002G066800 Sobic001G123600 Sobic001G123600 Sobic002G296400--Sobic001G123600 Sobic006G191200--Sobic001G123600 Sobic006G191200--Sobic002G296400 Sobic001G051400 Sobic001G051400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic002G386900 Sobic002G386900 Sobic006G191200--Sobic002G386900 Sobic009G120400 Sobic009G120400 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic002G371600 Sobic002G371600 Sobic006G245900--Sobic002G371600 Sobic006G245900--Sobic002G296400 Sobic004G031300 Sobic004G031300 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic003G308500 Sobic003G308500 Sobic006G245900--Sobic003G308500 Sobic001G346900 Sobic001G346900 Sobic006G245900--Sobic001G346900 Sobic002G363800--Sobic002G296400 Sobic002G363800--Sobic002G371600 Sobic001G125500 Sobic001G125500 Sobic002G363800--Sobic001G125500 Sobic001G097900 Sobic001G097900 Sobic002G363800--Sobic001G097900 Sobic002G363800--Sobic003G256800 Sobic008G092800 Sobic008G092800 Sobic002G363800--Sobic008G092800 Sobic002G363800--Sobic007G145400 Sobic001G340000 Sobic001G340000 Sobic002G363800--Sobic001G340000 Sobic003G230600 Sobic003G230600 Sobic002G363800--Sobic003G230600 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic005G114500 Sobic005G114500 Sobic003G113300--Sobic005G114500 Sobic007G030100 Sobic007G030100 Sobic003G113300--Sobic007G030100 Sobic003G393200 Sobic003G393200 Sobic003G113300--Sobic003G393200 Sobic003G113300--Sobic001G051400 Sobic004G265500 Sobic004G265500 Sobic001G308400--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic003G043000 Sobic003G043000 Sobic001G308400--Sobic003G043000 Sobic010G169900 Sobic010G169900 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic003G394200 Sobic003G394200 Sobic001G308400--Sobic003G394200 Sobic009G008200--Sobic002G296400 Sobic004G063300 Sobic004G063300 Sobic009G008200--Sobic004G063300 Sobic002G076500 Sobic002G076500 Sobic009G008200--Sobic002G076500 Sobic006G210700 Sobic006G210700 Sobic009G008200--Sobic006G210700 Sobic009G008200--Sobic002G066800 Sobic002G141200 Sobic002G141200 Sobic009G008200--Sobic002G141200 Sobic009G008200--Sobic001G097900 Sobic009G008200--Sobic001G051400 Sobic003G023200 Sobic003G023200 Sobic009G008200--Sobic003G023200 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G012000 Sobic003G012000 Sobic003G256800--Sobic003G012000 Sobic006G029100 Sobic006G029100 Sobic003G256800--Sobic006G029100 Sobic003G256800--Sobic002G296400 Sobic003G256800--Sobic002G363800 Sobic003G256800--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic003G256800--Sobic002G398700 Sobic002G066800--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic002G066800--Sobic005G087300 Sobic002G066800--Sobic002G078100 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic002G066800--Sobic006G191200 Sobic002G066800--Sobic003G023200 Sobic001G123600--Sobic006G191200 Sobic001G229300 Sobic001G229300 Sobic001G123600--Sobic001G229300 Sobic003G360300 Sobic003G360300 Sobic001G123600--Sobic003G360300 Sobic007G034200 Sobic007G034200 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic001G123600--Sobic009G120400 Sobic001G123600--Sobic003G299500 Sobic001G123600--Sobic003G010900
Octagon: transcription factors


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