Gene annotation
Transcriptome id Sobic.003G023200.1
Synonym ATRAD51C, Sb03g002200, RAD51C
Functional annotation DNA repair protein Rad51, putative, expressed
UniProt A0A1B6Q0Y2
Pfam PF08423
Panther DB PTHR22942 PTHR22942:SF14
NCBI CDD KOG1434; Meiotic recombination protein Dmc1
KEGG Orthology K10870; RAD51L2, RAD51-like protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45280 : RAS associated with diabetes protein 51C
RAP-DB (Rice) LOC_Os01g39630.1 : DNA repair protein Rad51, putative, expressed
MaizeGDB (Corn) Zm00025a028473
Brachypodium KQK08405 , KQK08404 , KQK08407 , KQK08406 , KQK08409 , KQK08408 , PNT72235 , PNT72236 , PNT72237 , PNT72238 , PNT72239 , KQK08412 , KQK08413 , KQK08410 , KQK08411 , KQK08416 , KQK08414 , KQK08415 , PNT72241 , PNT72240 , PNT72243 , PNT72242
Barley HORVU0Hr1G003380.18 , HORVU0Hr1G003380.19 , HORVU0Hr1G003380.10 , HORVU0Hr1G003380.11 , HORVU0Hr1G003380.16 , HORVU0Hr1G003380.17 , HORVU0Hr1G003380.14 , HORVU0Hr1G003380.15 , HORVU0Hr1G003380.3 , HORVU0Hr1G003380.8 , HORVU0Hr1G003380.9 , HORVU0Hr1G003380.12 , HORVU0Hr1G003380.13 , HORVU0Hr1G003380.21 , HORVU0Hr1G003380.20
Wheat TraesCS2D02G214900 , TraesCS2B02G234700 , TraesCS2B02G234700 , TraesCS2A02G208200
Populus -


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cDNA sequences
Sobic.003G023200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
2 Sobic.006G212900 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
3 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
4 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
5 Sobic.001G097900 expressed protein -
6 Sobic.005G087300 protein kinase family protein, putative, expressed -
7 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
8 Sobic.001G229300 expressed protein -
9 Sobic.007G122700 expressed protein -
10 Sobic.003G022000 phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed K01000: phospho-N-acetylmuramoyl-pentapeptide-transferase
11 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
12 Sobic.001G475000 expressed protein -
13 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
14 Sobic.009G040250 - -
15 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
16 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
17 Sobic.002G141200 expressed protein -
18 Sobic.004G198300 expressed protein -
19 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
20 Sobic.009G008200 STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase


Gene co-expression network
sample Sobic003G023200 Sobic003G023200 Sobic002G066800 Sobic002G066800 Sobic003G023200--Sobic002G066800 Sobic006G212900 Sobic006G212900 Sobic003G023200--Sobic006G212900 Sobic010G250000 Sobic010G250000 Sobic003G023200--Sobic010G250000 Sobic003G256800 Sobic003G256800 Sobic003G023200--Sobic003G256800 Sobic001G097900 Sobic001G097900 Sobic003G023200--Sobic001G097900 Sobic005G087300 Sobic005G087300 Sobic003G023200--Sobic005G087300 Sobic002G426100 Sobic002G426100 Sobic003G023200--Sobic002G426100 Sobic001G229300 Sobic001G229300 Sobic003G023200--Sobic001G229300 Sobic007G122700 Sobic007G122700 Sobic003G023200--Sobic007G122700 Sobic001G051400 Sobic001G051400 Sobic002G066800--Sobic001G051400 Sobic002G066800--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic002G066800--Sobic002G078100 Sobic003G393200 Sobic003G393200 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic006G191200 Sobic006G191200 Sobic002G066800--Sobic006G191200 Sobic002G066800--Sobic003G023200 Sobic006G212900--Sobic003G023200 Sobic004G247100 Sobic004G247100 Sobic006G212900--Sobic004G247100 Sobic003G193500 Sobic003G193500 Sobic006G212900--Sobic003G193500 Sobic009G195700 Sobic009G195700 Sobic006G212900--Sobic009G195700 Sobic004G256300 Sobic004G256300 Sobic006G212900--Sobic004G256300 Sobic003G129300 Sobic003G129300 Sobic006G212900--Sobic003G129300 Sobic008G116600 Sobic008G116600 Sobic006G212900--Sobic008G116600 Sobic003G222700 Sobic003G222700 Sobic006G212900--Sobic003G222700 Sobic001G467100 Sobic001G467100 Sobic006G212900--Sobic001G467100 Sobic009G063800 Sobic009G063800 Sobic010G250000--Sobic009G063800 Sobic003G194300 Sobic003G194300 Sobic010G250000--Sobic003G194300 Sobic010G250000--Sobic003G023200 Sobic008G072500 Sobic008G072500 Sobic010G250000--Sobic008G072500 Sobic010G192600 Sobic010G192600 Sobic010G250000--Sobic010G192600 Sobic006G041800 Sobic006G041800 Sobic010G250000--Sobic006G041800 Sobic007G148400 Sobic007G148400 Sobic010G250000--Sobic007G148400 Sobic001G286100 Sobic001G286100 Sobic010G250000--Sobic001G286100 Sobic002G276800 Sobic002G276800 Sobic010G250000--Sobic002G276800 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic002G227500 Sobic002G227500 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G012000 Sobic003G012000 Sobic003G256800--Sobic003G012000 Sobic006G029100 Sobic006G029100 Sobic003G256800--Sobic006G029100 Sobic002G296400 Sobic002G296400 Sobic003G256800--Sobic002G296400 Sobic002G363800 Sobic002G363800 Sobic003G256800--Sobic002G363800 Sobic003G256800--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic003G256800--Sobic002G398700 Sobic001G097900--Sobic010G192600 Sobic001G474400 Sobic001G474400 Sobic001G097900--Sobic001G474400 Sobic001G445500 Sobic001G445500 Sobic001G097900--Sobic001G445500 Sobic006G106300 Sobic006G106300 Sobic001G097900--Sobic006G106300 Sobic005G110499 Sobic005G110499 Sobic001G097900--Sobic005G110499 Sobic001G097900--Sobic002G227500 Sobic001G308400 Sobic001G308400 Sobic001G097900--Sobic001G308400 Sobic009G040250 Sobic009G040250 Sobic001G097900--Sobic009G040250 Sobic005G114500 Sobic005G114500 Sobic001G097900--Sobic005G114500 Sobic005G087300--Sobic009G040250 Sobic002G313100 Sobic002G313100 Sobic005G087300--Sobic002G313100 Sobic005G087300--Sobic002G066800 Sobic004G198300 Sobic004G198300 Sobic005G087300--Sobic004G198300 Sobic007G086600 Sobic007G086600 Sobic005G087300--Sobic007G086600 Sobic005G087300--Sobic003G393200 Sobic007G105700 Sobic007G105700 Sobic005G087300--Sobic007G105700 Sobic002G322400 Sobic002G322400 Sobic005G087300--Sobic002G322400 Sobic010G160300 Sobic010G160300 Sobic005G087300--Sobic010G160300 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic001G123600 Sobic001G123600 Sobic001G229300--Sobic001G123600 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic001G229300--Sobic004G256300 Sobic001G229300--Sobic003G010900 Sobic001G229300--Sobic002G066800 Sobic001G229300--Sobic003G222700 Sobic002G142700 Sobic002G142700 Sobic001G229300--Sobic002G142700 Sobic006G106600 Sobic006G106600 Sobic001G229300--Sobic006G106600 Sobic003G005500 Sobic003G005500 Sobic007G122700--Sobic003G005500 Sobic009G163400 Sobic009G163400 Sobic007G122700--Sobic009G163400 Sobic008G141900 Sobic008G141900 Sobic007G122700--Sobic008G141900 Sobic003G045450 Sobic003G045450 Sobic007G122700--Sobic003G045450 Sobic001G010500 Sobic001G010500 Sobic007G122700--Sobic001G010500 Sobic004G276000 Sobic004G276000 Sobic007G122700--Sobic004G276000 Sobic001G376501 Sobic001G376501 Sobic007G122700--Sobic001G376501 Sobic008G046200 Sobic008G046200 Sobic007G122700--Sobic008G046200 Sobic006G119900 Sobic006G119900 Sobic007G122700--Sobic006G119900
Octagon: transcription factors


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